This repository is an Example using GitHub Actions [egga] for the Advanced Programming with R class. The project consists of a quarto document updated once a week or whenever there’s a push or pull request. It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last update was on 2025-01-12 00:52:53.
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Vibration Serviceability Assessment of Floor Structures: Simulation of Human-Structure-Environment Interactions Using Agent-Based Modeling.
Shahabpoor E, Berari B, Pavic A.
Sensors (Basel). 2024 Dec 28;25(1):126. doi: 10.3390/s25010126.
The I-VSA method, however, had limited provisions to simulate simultaneously multiple modes of structure in HSI, to simulate human-human and human-environment interactions, and the movement pattern of the occupants/pedestrians. This study proposes a new Agent-based …
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Emergence of multiple foraging strategies under competition.
Kim H, Subedi M, Josić K.
Math Biosci. 2025 Jan 8:109377. doi: 10.1016/j.mbs.2025.109377. Online ahead of print.
To address this question, we introduce a minimal agent-based model of the coevolution of two phenotypic attributes critical for successful foraging in crowded environments: movement speed and perceptual acuity. …
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Integrating artificial intelligence with mechanistic epidemiological modeling: a scoping review of opportunities and challenges.
Ye Y, Pandey A, Bawden C, Sumsuzzman DM, Rajput R, Shoukat A, Singer BH, Moghadas SM, Galvani AP.
Nat Commun. 2025 Jan 10;16(1):581. doi: 10.1038/s41467-024-55461-x.
Integrating prior epidemiological knowledge embedded within mechanistic models with the data-mining capabilities of artificial intelligence (AI) offers transformative potential for epidemiological modeling. …Our review highlights the practical value of integrated …
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Impact of RSVpreF vaccination on reducing the burden of respiratory syncytial virus in infants and older adults.
Du Z, Pandey A, Moghadas SM, Bai Y, Wang L, Matrajt L, Singer BH, Galvani AP.
Nat Med. 2025 Jan 9. doi: 10.1038/s41591-024-03431-7. Online ahead of print.
Prefusion F protein-based vaccines have shown high efficacy against RSV disease in clinical trials, offering promise for mitigating this burden through maternal and older adult immunization. Employing an individual-based model, we evaluated the impact of RSV vaccination on …
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Utilization of Acid Suppressants After Withdrawal of Ranitidine in Korea: An Interrupted Time Series Analysis.
Choi JP, Kim S, Park JS, Kim MS, Choi NK, Shin CM, Lee J.
J Prev Med Public Health. 2024 Dec 30. doi: 10.3961/jpmph.24.357. Online ahead of print.
Drug utilization was calculated for each agent based on the defined daily dose (DDD). To evaluate changes in utilization following the ranitidine recall, an interrupted time series analysis was conducted using segmented linear regression and an autoregressive integr …
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Beyond Homochirality: Computer Modeling Hints of Heterochiral Proteins in Early and Extraterrestrial Life.
Casimo G, Micca Longo G, Longo S.
Astrobiology. 2024 Dec 26. doi: 10.1089/ast.2024.0072. Online ahead of print.
Agent-based simulations are set to describe the early biotic selection of oligomers made of monomers of different chirality. …
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Replicator dynamics on heterogeneous networks.
Li J, Wang X, Li C, Zhang B.
J Math Biol. 2025 Jan 9;90(2):16. doi: 10.1007/s00285-024-02177-7.
Networked evolutionary game theory is a well-established framework for modeling the evolution of social behavior in structured populations. Most of the existing studies in this field have focused on 2-strategy games on heterogeneous networks or n-strategy games on regular …
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Using electronic medical records in hospital simulation for infection control intervention assessment.
Haghpanah F, Klein EY; CDC MInD-Healthcare Program.
Infect Control Hosp Epidemiol. 2025 Jan 9:1-7. doi: 10.1017/ice.2024.224. Online ahead of print.
However, capturing nuances between institutions and in patient populations have adversely affected the power of computational models of nosocomial transmission. METHODS: In this study, we present an agent-based model of ICUs in a tertiary care hospital …
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Noninvasive blood-brain barrier integrity mapping in patients with high-grade glioma and metastasis by multi-echo time-encoded arterial spin labeling.
Hoffmann G, Preibisch C, Günther M, Mahroo A, van Osch MJP, Václavů L, Metz MC, Jung K, Zimmer C, Wiestler B, Kaczmarz S.
Magn Reson Med. 2025 Jan 8. doi: 10.1002/mrm.30415. Online ahead of print.
Clinical assessment is qualitative; quantitative evaluation is feasible using the K(2) leakage parameter from dynamic susceptibility contrast MRI. However, contrast agent-based techniques are limited in patients with renal dysfunction and insensitive to subtle impai …
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Modeling of randomized hepatitis C vaccine trials: Bridging the gap between controlled human infection models and real-word testing.
Mackesy-Amiti ME, Gutfraind A, Tatara E, Collier NT, Cotler SJ, Page K, Ozik J, Boodram B, Major M, Dahari H.
PNAS Nexus. 2024 Dec 18;4(1):pgae564. doi: 10.1093/pnasnexus/pgae564. eCollection 2025 Jan.
To accelerate vaccine development, controlled human infection (CHI) models have been suggested as a means to identify effective vaccines. To bridge the gap between CHI models and real-world testing, we developed an agent-based model simulating a …
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