add deprecation warning on input

CHANGELOG.md

@@ -8,7 +8,19 @@ and this project adheres to [Semantic Versioning][].
 [keep a changelog]: https://keepachangelog.com/en/1.0.0/
 [semantic versioning]: https://semver.org/spec/v2.0.0.html
 
-## [1.0.0b1] - 2023-02-21
+## [1.0.1] - 2024-05-10
+
+### :warning: Deprecation Warning
+
+-   The MrVI implementation has been moved to `scvi-tools` (`from scvi.external import MRVI`),
+    and this package will no longer be maintained.
+
+### Added
+
+-   Adds deprecation warning in the form of a FutureWarning on import.
+-   Various fixes and UX improvements to the model kwargs, DE, and DA functions.
+
+## [1.0.0b1] - 2024-02-21
 
 ### :warning: Breaking Changes
 

pyproject.toml

@@ -5,7 +5,7 @@ requires = ["hatchling"]
 
 [project]
 name = "mrvi"
-version = "1.0.0b1"
+version = "1.0.1"
 description = "Multi-resolution Variational Inference"
 readme = "README.md"
 requires-python = ">=3.9"
@@ -14,7 +14,7 @@ authors = [
     {name = "Justin Hong"},
     {name = "Pierre Boyeau"},
     {name = "Adam Gayoso"},
-    {name = "Can Ergan"},
+    {name = "Can Ergen"},
     {name = "Martin Kim"},
 ]
 maintainers = [

src/mrvi/__init__.py

@@ -1,9 +1,16 @@
+import warnings
 from importlib.metadata import version
 
 from ._model import MrVI
 from ._module import MrVAE
 from ._types import MrVIReduction
 
+warnings.warn(
+    "This package is deprecated. For the latest version of MrVI, please install `scvi-tools` and import the model class via `scvi.external.MRVI`.",
+    FutureWarning,
+    stacklevel=2,
+)
+
 __all__ = [
     "MrVI",
     "MrVAE",