missing variables added

abhi0395 · Jul 27, 2024 · 6be071c · 6be071c
1 parent 59f2ecc
commit 6be071c
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/qsoabsfind/absfinder.py b/qsoabsfind/absfinder.py
@@ -221,7 +221,7 @@ def convolution_method_absorber_finder_in_QSO_spectra(fits_file, spec_index, abs
 
         if len(pure_z_abs) > 0:
             match_abs1 = remove_Mg_falsely_identified_fe_absorber(spec_index, pure_z_abs, lam_obs, residual, error, use_kernel=absorber, d_pix=d_pix)
-            match_abs2 = z_abs_from_same_metal_absorber(pure_z_abs, lam_obs, residual, error, use_kernel=absorber)
+            match_abs2 = z_abs_from_same_metal_absorber(pure_z_abs, lam_obs, residual, error, d_pix, use_kernel=absorber)
             ind_z = contiguous_pixel_remover(pure_z_abs, sn1_all, sn2_all)
             sel_indices = (match_abs1 == -1) & (match_abs2 == -1) & (ind_z == -1)  # pure final absorber candidates
 

diff --git a/qsoabsfind/absorberutils.py b/qsoabsfind/absorberutils.py
@@ -226,7 +226,7 @@ def remove_Mg_falsely_identified_fe_absorber(index, z_after_grouping, lam_obs, r
     lam_obs (numpy.ndarray): Observed wavelengths.
     residual (numpy.ndarray): Residual values.
     error (numpy.ndarray): Error values corresponding to the residuals.
-    d_pix (int): Delta pixel value.
+    d_pix (float): Delta pixel value.
 
     Returns:
     numpy.ndarray: Updated list of absorbers with false positives removed.
@@ -282,7 +282,7 @@ def remove_Mg_falsely_identified_fe_absorber(index, z_after_grouping, lam_obs, r
     return match_abs
 
 @jit(nopython=True)
-def z_abs_from_same_metal_absorber(first_list_z, lam_obs, residual, error, use_kernel='MgII'):
+def z_abs_from_same_metal_absorber(first_list_z, lam_obs, residual, error, d_pix=0.6, use_kernel='MgII'):
     """
     Remove any absorber that arises due to the 2803 line but has already been detected for the 2796 line,
     exploiting the doublet property of MgII to remove false positives.
@@ -292,6 +292,7 @@ def z_abs_from_same_metal_absorber(first_list_z, lam_obs, residual, error, use_k
     lam_obs (numpy.ndarray): Observed wavelengths.
     residual (numpy.ndarray): Residual values.
     error (numpy.ndarray): Error values corresponding to the residuals.
+    d_pix (float): Pixel distance for line separation during Gaussian fitting. Default is 0.6.
     use_kernel (str, optional): Kernel type (MgII, CIV). Default is 'MgII'.
 
     Returns: