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1. weng-lab/libzdock weng-lab/libzdock Public

   ZDOCK predictions and PDB structures in C++ and Python

   C++ 11 5

2. weng-lab/stateregexp weng-lab/stateregexp Public

   extract genomic regions from segmentation using regular expression

   Python

3. weng-lab/TwoBit weng-lab/TwoBit Public

   Reader / Writer for UCSC 2-bit Genome Format

   Python 2

4. snakemake/snakemake snakemake/snakemake Public

   This is the development home of the workflow management system Snakemake. For general information, see

   HTML 2.3k 561

5. pezmaster31/bamtools pezmaster31/bamtools Public

   C++ API & command-line toolkit for working with BAM data

   C++ 420 153

6. arq5x/bedtools arq5x/bedtools Public

   A powerful toolset for genome arithmetic.

   C++ 140 85