Update git hash.

.github/workflows/ci.yaml.new

@@ -0,0 +1,59 @@
+name: CI
+on:
+  push:
+  pull_request:
+  schedule:
+    - cron: "0 0 1 * *"  # run monthly
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        modes: ["s", "p"]
+        schedulers: ["gridengine", "slurm"]
+    env:
+      REGISTRY: ghcr.io
+      NAME: ${{ matrix.schedulers }}-${{ matrix.modes }}
+      IMAGE: ${{ github.repository_owner }}/sv-callers-${{ matrix.schedulers }}
+      TAG: "1.2.2"
+      ARGS: 0 ${{ matrix.modes }} ${{ matrix.schedulers }}
+    steps:
+      - name: Checkout repo
+        uses: actions/checkout@v2
+      - name: Set up Python
+        uses: actions/setup-python@v1
+        with:
+          python-version: "3.7"
+      - name: Python info
+        run: |
+          which python
+          python --version
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -r test-requirements.txt
+      - name: Show pip list
+        run: pip list
+      - name: Run unit tests
+        run: |
+          pytest --cov=helper_functions --cov-report=xml
+          mv coverage.xml ${{ github.workspace }}
+        working-directory: workflow
+      - name: Log into registry
+        uses: docker/login-action@v1
+        with:
+          registry: ${{ env.REGISTRY }}
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+      - name: Run workflow
+        run: |
+          docker run -d -p 10000:22 --name $NAME ${REGISTRY}/${IMAGE,,}:${TAG}
+          sleep 10
+          docker ps -a
+          docker exec -u xenon -t $NAME bash -c "cd sv-callers && ./run.sh $ARGS"
+      - name: Upload coverage report to Codacy
+        uses: codacy/codacy-coverage-reporter-action@master
+        with:
+          project-token: ${{ secrets.CODACY_PROJECT_TOKEN }}
+          coverage-reports: coverage.xml

.github/workflows/docker-build.yaml

@@ -7,7 +7,7 @@ jobs:
     runs-on: ubuntu-latest
     env:
       REGISTRY: ghcr.io
-      GIT_COMMIT: "f68b188"
+      GIT_COMMIT: "c7a9c25"
       TAG: 1.1.0
       NAME: piqmie
     steps: