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@cheny19 cheny19 released this 24 May 00:24
· 240 commits to master since this release
v2.1.0
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Learn about vigilant mode.

Changes:

  1. The model fitting stage is run in Python now and supports multiprocessing. R is no longer required for the whole NanoSim pipeline

  2. Improvement on runtime in model fitting stage

Notice:
We noticed that the proposed mixture model may not be well fitted for indels inferred from minimap2 and NanoSim will throw out warnings when it does not fit well. Users can still use the best available parameters to simulate, and the overall error rate will not be hugely affected.

We are working on new models for minimap2, stay tuned.

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