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Task/kbdev 846 fix pubmed URLs to new pubmed URL #128

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merged 2 commits into from
Nov 3, 2023
Merged

Task/kbdev 846 fix pubmed URLs to new pubmed URL #128

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623b583
update pubmed url
Nov 3, 2023
91b0155
update description of pubmed
Nov 3, 2023
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3 changes: 1 addition & 2 deletions src/entrez/pubmed.js
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,6 @@ const { checkSpec } = require('../util');
const { fetchByIdList, uploadRecord, preLoadCache: preLoadAnyCache } = require('./util');

const ajv = new Ajv();
const LINK_URL = 'https://pubmed.ncbi.nlm.nih.gov';

const { pubmed: SOURCE_DEFN } = require('../sources');

Expand Down Expand Up @@ -35,7 +34,7 @@ const parseRecord = (record) => {
const parsed = {
name: record.title,
sourceId: record.uid,
url: `${LINK_URL}/${record.uid}`,
url: `${SOURCE_DEFN.url}/${record.uid}`,
};

if (record.fulljournalname) {
Expand Down
4 changes: 2 additions & 2 deletions src/sources.js
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Expand Up @@ -239,10 +239,10 @@ const sources = {
url: 'http://oncotree.mskcc.org',
},
pubmed: {
description: 'pubmed comprises more than 29 million citations for biomedical literature from medline, life science journals, and online books. citations may include links to full-text content from pubmed central and publisher web sites',
description: 'PubMed is a free resource supporting the search and retrieval of biomedical and life sciences literature with the aim of improving health–both globally and personally.',
displayName: 'PubMed',
name: 'pubmed',
url: 'https://www.ncbi.nlm.nih.gov/pubmed',
url: 'https://pubmed.ncbi.nlm.nih.gov',
usage: 'https://www.ncbi.nlm.nih.gov/home/about/policies',
},
refseq: {
Expand Down