unikseq v2.0.0 - conserved and/or unique region identification

Manuscript version.
The unikseq code and functionality is identical to v1.3.5.
Bumped version for the paper.

BED file output support

This release adds basic BED file output support to both unikseq and unikseq-Bloom

This feature can be used to quickly cross-reference the regions identified by unikseq with any existing annotations/genome features in GFF3/other file format (e.g., like the ones supported by bedtools intersect)

zip/gz (compressed FASTA) file support

Initial support for gz and zip (compressed FASTA) files in unikseq.pl, unikseq-Bloom.pl and writeBloom.pl

fix variable passing

minor bug fix to unikseq.pl

revert name of outgroup to teleost

• test data : revert name of outgroup to teleost

What's Changed

• Update unikseq-Bloom.pl by @lcoombe in #1

New Contributors

• @lcoombe made their first contribution in #1

Full Changelog: v1.3.1...v1.3.2

unikseq code update and initial Bloom filter (scalable) version

Full Changelog: v1.0.0...v1.3.1

• added new mode for conserved (-c) region identification
• added new verbose (-v) and (-t) output options
• added test data
• initial release of unikseq-Bloom, for unique region identification from large, Gbp-size, genome sequences
• improved documentation

unikseq : eDNA protocol version

Initial public release of unikseq;

Version used in the original eDNA protocol and showcased in the corresponding manuscript