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@blekhmanlab

Blekhman Lab

Microbiome research at the University of Chicago

Popular repositories Loading

  1. rxivist rxivist Public archive

    API providing access to papers and authors scraped from biorxiv.org

    Python 60 11

  2. host_gene_microbiome_interactions host_gene_microbiome_interactions Public

    Analysis framework for integrating gut microbiome and host gene expression data

    R 31 12

  3. biomehorizon biomehorizon Public

    Plot microbiome time series in parallel

    R 24 2

  4. hominid hominid Public

    Hominid: host-microbiome interaction identification

    Python 16 3

  5. rxivist_web rxivist_web Public archive

    Web application for Rxivist, the site that makes it easier to find the most talked-about papers on bioRxiv.org

    Smarty 11 4

  6. panlingua panlingua Public archive

    Multilingual preprint search tool for bioRxiv

    Python 1

Repositories

Showing 10 of 17 repositories
  • snakemake-compendium Public

    Human Microbiome Compendium processing pipeline

    blekhmanlab/snakemake-compendium’s past year of commit activity
    R 0 0 5 0 Updated Nov 4, 2024
  • compendium Public

    Metadata ingest service

    blekhmanlab/compendium’s past year of commit activity
    Python 0 Apache-2.0 0 11 0 Updated Sep 25, 2024
  • compendium_v1 Public

    Code associated with the first publication describing the Human Microbiome Compendium

    blekhmanlab/compendium_v1’s past year of commit activity
    R 0 0 0 0 Updated Sep 9, 2024
  • hominid Public

    Hominid: host-microbiome interaction identification

    blekhmanlab/hominid’s past year of commit activity
    Python 16 MIT 3 2 1 Updated Jun 17, 2024
  • milk_infant_microbiome Public

    Project on breast milk and infant gut microbiome

    blekhmanlab/milk_infant_microbiome’s past year of commit activity
    0 GPL-3.0 1 0 0 Updated Jan 25, 2024
  • compendium_website Public

    Website for the Human Microbiome Compendium

    blekhmanlab/compendium_website’s past year of commit activity
    TypeScript 0 1 1 0 Updated Jan 8, 2024
  • snakemake-template Public template

    Quickstart for building out a new snakemake pipeline

    blekhmanlab/snakemake-template’s past year of commit activity
    Python 0 0 1 0 Updated Nov 16, 2023
  • biomehorizon Public

    Plot microbiome time series in parallel

    blekhmanlab/biomehorizon’s past year of commit activity
    R 24 2 5 0 Updated Nov 7, 2023
  • biorxiv_countries Public

    Code repository for "International authorship and collaboration in bioRxiv preprints"

    blekhmanlab/biorxiv_countries’s past year of commit activity
    TSQL 0 AGPL-3.0 1 0 1 Updated May 22, 2023
  • rxivist_web Public archive

    Web application for Rxivist, the site that makes it easier to find the most talked-about papers on bioRxiv.org

    blekhmanlab/rxivist_web’s past year of commit activity
    Smarty 11 AGPL-3.0 4 14 (3 issues need help) 0 Updated Mar 1, 2023
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