prod release #202
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| name: prod release | |
| on: | |
| workflow_run: | |
| workflows: ["unit tests"] | |
| types: | |
| - completed | |
| branches: | |
| - main | |
| permissions: | |
| id-token: write | |
| contents: write | |
| jobs: | |
| release: | |
| runs-on: ubuntu-latest | |
| if: ${{ github.event.workflow_run.conclusion == 'success' }} | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.event.workflow_run.head_branch }} | |
| - name: set up python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: build package | |
| run: | | |
| rm -rf dist/ | |
| python -m pip install build | |
| python -m build | |
| - name: authenticate to google cloud | |
| id: "auth" | |
| uses: google-github-actions/auth@v0 | |
| with: | |
| workload_identity_provider: "${{ secrets.WORKLOAD_IDENTITY_PROVIDER }}" | |
| service_account: "${{ secrets.RUN_SA_EMAIL }}" | |
| - name: "setup gcloud sdk" | |
| uses: google-github-actions/setup-gcloud@v0 | |
| - name: Copy files to release directory | |
| shell: bash | |
| run: |- | |
| gcloud storage rm -r gs://seqr-pipeline-runner-builds/prod/latest/ || echo 'No latest release' | |
| gcloud storage cp v03_pipeline/bin/* gs://seqr-pipeline-runner-builds/prod/latest/bin/ | |
| gcloud storage cp dist/*.whl gs://seqr-pipeline-runner-builds/prod/latest/pyscripts.zip | |
| gcloud storage cp v03_pipeline/bin/* gs://seqr-pipeline-runner-builds/prod/${{ github.event.workflow_run.head_sha }}/bin/ | |
| gcloud storage cp dist/*.whl gs://seqr-pipeline-runner-builds/prod/${{ github.event.workflow_run.head_sha }}/pyscripts.zip | |
| gcloud storage cp -r v03_pipeline/var/vep/* gs://seqr-reference-data/vep/ | |
| docker: | |
| runs-on: ubuntu-latest | |
| if: ${{ github.event.workflow_run.conclusion == 'success' }} | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.event.workflow_run.head_branch }} | |
| - name: authenticate to google cloud | |
| id: "auth" | |
| uses: google-github-actions/auth@v0 | |
| with: | |
| workload_identity_provider: "${{ secrets.WORKLOAD_IDENTITY_PROVIDER }}" | |
| service_account: "${{ secrets.RUN_SA_EMAIL }}" | |
| - name: "setup gcloud sdk" | |
| uses: google-github-actions/setup-gcloud@v0 | |
| - name: Build and push images | |
| run: |- | |
| gcloud builds submit --quiet --substitutions="COMMIT_SHA=${{ github.event.workflow_run.head_sha }},_CUSTOM_BRANCH_TAG=gcloud-prod" --config .cloudbuild/docker.cloudbuild.yaml --gcs-log-dir=gs://seqr-github-actions-logs/logs . | |
| helm_update: | |
| runs-on: ubuntu-latest | |
| needs: docker | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| repository: broadinstitute/seqr-helm | |
| ref: main | |
| persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal token | |
| fetch-depth: 0 # otherwise, you will failed to push refs to dest repo | |
| - name: Update appVersion in seqr Chart file | |
| uses: mikefarah/[email protected] | |
| with: | |
| cmd: > | |
| yq -i '.appVersion = "${{ github.event.workflow_run.head_sha }}"' charts/pipeline-runner/Chart.yaml | |
| - name: Commit and Push changes | |
| uses: Andro999b/[email protected] | |
| with: | |
| repository: broadinstitute/seqr-helm | |
| branch: main | |
| github_token: ${{ secrets.SEQR_VERSION_UPDATE_TOKEN }} | |
| author_email: ${{ github.actor }}@users.noreply.github.com | |
| author_name: tgg-automation | |
| message: "Update pipeline-runner chart appVersion to ${{ github.event.workflow_run.head_sha }}" |