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delete old reference data code 😝 #990

Merged
merged 57 commits into from
Nov 25, 2024
Merged

delete old reference data code 😝 #990

merged 57 commits into from
Nov 25, 2024

Commits on Nov 20, 2024

  1. first pass update vat

    @jklugherz
    jklugherz committed Nov 20, 2024
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  2. Merge remote-tracking branch 'origin/reference-data-refactor' into re… 

    …ference-dataset-update-vat
    @jklugherz
    jklugherz committed Nov 20, 2024
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  3. merge feature

    @jklugherz
    jklugherz committed Nov 20, 2024
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  4. fix the diff for now

    @jklugherz
    jklugherz committed Nov 20, 2024
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  5. include_queries

    @jklugherz
    jklugherz committed Nov 20, 2024
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  6. interval ht

    @jklugherz
    jklugherz committed Nov 20, 2024
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  7. tests

    @jklugherz
    jklugherz committed Nov 20, 2024
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  8. Merge remote-tracking branch 'origin/reference-data-refactor' into re… 

    …ference-dataset-update-vat
    @jklugherz
    jklugherz committed Nov 20, 2024
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  9. exclude

    @jklugherz
    jklugherz committed Nov 20, 2024
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  10. nicer

    @jklugherz
    jklugherz committed Nov 20, 2024
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Commits on Nov 21, 2024

  1. fix inteval test

    @jklugherz
    jklugherz committed Nov 21, 2024
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  2. split fn

    @jklugherz
    jklugherz committed Nov 21, 2024
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  3. eigen test

    @jklugherz
    jklugherz committed Nov 21, 2024
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  4. clinvar wip

    @jklugherz
    jklugherz committed Nov 21, 2024
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  5. hgmd

    @jklugherz
    jklugherz committed Nov 21, 2024
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  6. clinvar

    @jklugherz
    jklugherz committed Nov 21, 2024
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  7. gnomad genomes and exomes

    @jklugherz
    jklugherz committed Nov 21, 2024
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  8. delete

    @jklugherz
    jklugherz committed Nov 21, 2024
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  9. 38 snv_indel done

    @jklugherz
    jklugherz committed Nov 21, 2024
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  10. mito tests

    @jklugherz
    jklugherz committed Nov 21, 2024
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  11. done with tests?

    @jklugherz
    jklugherz committed Nov 21, 2024
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  12. merge feature

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    jklugherz committed Nov 21, 2024
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Commits on Nov 22, 2024

  1. custom_select

    @jklugherz
    jklugherz committed Nov 22, 2024
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  2. fields test

    @jklugherz
    jklugherz committed Nov 22, 2024
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  3. disable write new samples tests for now

    @jklugherz
    jklugherz committed Nov 22, 2024
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  4. Merge remote-tracking branch 'origin/reference-data-refactor' into re… 

    …ference-dataset-update-vat
    @jklugherz
    jklugherz committed Nov 22, 2024
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  5. working on tests

    @jklugherz
    jklugherz committed Nov 22, 2024
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  6. merge feature

    @jklugherz
    jklugherz committed Nov 22, 2024
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  7. Merge remote-tracking branch 'origin/reference-dataset-update-vat' in… 

    …to reference-data-new-variants
    @jklugherz
    jklugherz committed Nov 22, 2024
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  8. update update vat with new samples tests

    @jklugherz
    jklugherz committed Nov 22, 2024
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  9. extra file

    @jklugherz
    jklugherz committed Nov 22, 2024
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  10. other skipped test

    @jklugherz
    jklugherz committed Nov 22, 2024
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  11. make select and filter similar

    @bpblanken
    bpblanken committed Nov 22, 2024
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  12. tweak

    @bpblanken
    bpblanken committed Nov 22, 2024
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Commits on Nov 23, 2024

  1. rename path and locus/interval filtering

    @bpblanken
    bpblanken committed Nov 23, 2024
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  2. make select and filter similar (#988) 

    * make select and filter similar

* tweak
    @bpblanken
    bpblanken authored Nov 23, 2024
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  3. merge

    @bpblanken
    bpblanken committed Nov 23, 2024
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  4. Cleanest set diff

    @bpblanken
    bpblanken committed Nov 23, 2024
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Commits on Nov 24, 2024

  1. Finish off

    @bpblanken
    bpblanken committed Nov 24, 2024
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  2. merge

    @bpblanken
    bpblanken committed Nov 24, 2024
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  3. Tests passing!

    @bpblanken
    bpblanken committed Nov 24, 2024
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  4. ruff

    @bpblanken
    bpblanken committed Nov 24, 2024
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  5. ruff

    @bpblanken
    bpblanken committed Nov 24, 2024
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Commits on Nov 25, 2024

  1. Change the params

    @bpblanken
    bpblanken committed Nov 25, 2024
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  2. Fix params

    @bpblanken
    bpblanken committed Nov 25, 2024
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  3. params

    @bpblanken
    bpblanken committed Nov 25, 2024
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  4. More clinvar mocking

    @bpblanken
    bpblanken committed Nov 25, 2024
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  5. hardcode these

    @bpblanken
    bpblanken committed Nov 25, 2024
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  6. Merge pull request #989 from broadinstitute/benb/other_cleanup 

    Final Cleanup!
    @jklugherz
    jklugherz authored Nov 25, 2024
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  7. Merge pull request #986 from broadinstitute/reference-data-new-variants 

    annotate new variants with updated rds
    @jklugherz
    jklugherz authored Nov 25, 2024
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  8. delete a bunch of stuff

    @jklugherz
    jklugherz committed Nov 25, 2024
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  9. ruff

    @jklugherz
    jklugherz committed Nov 25, 2024
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  10. remove rdc and crdq

    @jklugherz
    jklugherz committed Nov 25, 2024
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  11. merge

    @jklugherz
    jklugherz committed Nov 25, 2024
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  12. delete v02

    @jklugherz
    jklugherz committed Nov 25, 2024
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  13. remove comment references to deleted file

    @jklugherz
    jklugherz committed Nov 25, 2024
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  14. last test

    @jklugherz
    jklugherz committed Nov 25, 2024
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