v6.0.21

🧬 Features

• Rfc85 dynamic virtual study @forus (#11040)
• Implement RFC85 Dynamic Virtual Study @forus (cbioportal-frontend#5016)
• Add alphaMissense in functional impact column @leexgh (cbioportal-frontend#5042)

✨ Enhancements

• Add description to top of resource tab on patient view @Nelliney (cbioportal-frontend#4964)

🐛 Bug Fixes

• Fix sample/study counter in VS description @forus (cbioportal-frontend#5028)
• Fix Sift and Polyphen blank in NRAS @leexgh (cbioportal-frontend#5039)

👷‍♀️ Testing, Configuration & Deployment

• add retry logic for 404 errors @zainasir (cbioportal-frontend#5040)
• Update localdb test @dippindots (cbioportal-frontend#5048)

📘 Documentation

• Add setup guide for Kubernetes deployment @zainasir (#11232)
• Add gget CLI client to docs @inodb (#11035)
• Add instructions for accessing frontend on localhost with a self-signed certificate @yashhash2 (#11075)
• Add AlphaMissense news @leexgh (#11202)
• Add Mutation Assessor v4 news @leexgh (#11148)
• Add ICI note to chromoscope news @inodb (#11164)

🧹 Cleanup & Refactoring 🔧

• Remove unused noauthsessionservice property @nbentoneves (#11169)

🕵️‍♀️ Full commit logs

• Backend: v6.0.20...v6.0.21
• Frontend: cBioPortal/cbioportal-frontend@v6.0.20...v6.0.21

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning

v6.0.20

🐛 Bug Fixes

• Modify fetch resources from single study to multi-study @hweej (cbioportal-frontend#5038)

🏎 Performance Tweaks

• On Study View handle larger number of resource files @hweej (cbioportal-frontend#5034)

📘 Documentation

• Add Chromoscope News @inodb (#11133)

🕵️‍♀️ Full commit logs

• Backend: v6.0.19...v6.0.20
• Frontend: cBioPortal/cbioportal-frontend@v6.0.19...v6.0.20

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure#a-note-on-versioning

v6.0.19

🐛 Bug Fixes

• 🔒 Update Default Filter Chain Ordering for Spring Security @haynescd (#11153)
• Fix cache annotation resource data @inodb (#11152)

🎨 Style Tweaks

• Add Mutation Assessor V4 available date on tooltip @leexgh (cbioportal-frontend#5037)

👷‍♀️ Testing, Configuration & Deployment

• Update CGDS and force keycloak db to mysql 5 @haynescd (cbioportal-frontend#5036)

🕵️‍♀️ Full commit logs

• Backend: v6.0.18...v6.0.19
• Frontend: cBioPortal/cbioportal-frontend@v6.0.18...v6.0.19

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure#a-note-on-versioning

v6.0.18

✨ Enhancements

• Update StudyAgreement.tsx @alisman (cbioportal-frontend#5030)
• Custom data Enhancements for Plots Tab @Nelliney (cbioportal-frontend#4994)

🐛 Bug Fixes

• Fix Mutations Lollipop Tool Tip Info to await promise before retrieving patient counts @haynescd (cbioportal-frontend#5033)

⚙️ REST API Changes

• Add resource-data-all endpoint and MyBatis SQL methods @hweej (#11051)

📘 Documentation

• Update OS/PFS FAQ @tmazor (#11123)
• add name to team @zainasir (#11121)
• Update News-Genie.md @sbabyanusha (#11088)
• Update News.md @sbabyanusha (#11042)
• updated the hyve team and alumni in about-us @zeynepkaragoz (#11038)

👷‍♀️ Testing, Configuration & Deployment

• update screenshots @alisman (cbioportal-frontend#5022)

📦 Package Improvements

• API client update about Mutation Assessor v4 data and UI changes @leexgh (cbioportal-frontend#5015)

🕵️‍♀️ Full commit logs

• Backend: v6.0.17...v6.0.18
• Frontend: cBioPortal/cbioportal-frontend@v6.0.17...v6.0.18

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning

v6.0.17

✨ Enhancements

• Enhancement/files and links @Nelliney (cbioportal-frontend#4995)

🐛 Bug Fixes

• Resolve KM plot censored event bug and add caching @kalletlak (#11027)

📘 Documentation

• Update News.md @sbabyanusha (#11029)

🕵️‍♀️ Full commit logs

• Backend: v6.0.16...v6.0.17
• Frontend: cBioPortal/cbioportal-frontend@v6.0.16...v6.0.17

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning

v6.0.16

🧬 Features

• Add ability to spawn code notebooks from cBioPortal queries @gautamsarawagi (cbioportal-frontend#4856)

✨ Enhancements

• Require login for custom data @Nelliney (cbioportal-frontend#5003)
• Add Patient and Sample Resources to Study View @Nelliney (cbioportal-frontend#4961)
• Add organoid icon and color on Patient View @inodb (cbioportal-frontend#4963)

🐛 Bug Fixes

• Add missing study view filters for clinical data binning @onursumer (#11007)
• Fixed outdated keycloak docker image @ugurkoysuren (#10908)
• fix frontendproperties readFile() to work with classpath and update download_custom_buttons_json reference @pappde (#10946)
• Add oncoprint gap mode to hide percentages @alisman (cbioportal-frontend#4997)
• Gracefully fail when mutsig missing meta data @alisman (cbioportal-frontend#5000)
• CustomButtons: fix studyName missing when viewing under ResultsViewPage @pappde (cbioportal-frontend#4982)

🎨 Style Tweaks

• Refinements to jupyter modal #10949 @gautamsarawagi (cbioportal-frontend#4968)

👷‍♀️ Testing, Configuration & Deployment

• Update screenshots and api clients @alisman (cbioportal-frontend#4967)

📘 Documentation

• Fix "Feature development guide" link @pozhidaevak (#11010)
• Update News for RFC87 @pappde (#10941 #10990)
• Docker: improve instructions for testing the backend with docker @pappde (#10953)
• Deployment/Customization Docs: changed links to relative so they work both in github website and docs website @pappde (#10938)
• Fix Datahub link in FAQ @jamesqo (#10931)

🧰 Maintenance

• move async to async migration home.spec.js mutation-mapper-tool.spec.… @bemijonathan (cbioportal-frontend#4950)
• application.properties: add new property to enum and config_service @pappde (#10942)

🕵️‍♀️ Full commit logs

• Backend: v6.0.15...v6.0.16
• Frontend: cBioPortal/cbioportal-frontend@v6.0.15...v6.0.16

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning

v6.0.15

🧬 Features

• RFC87: add button to load GroupComparison table data in external tool @pappde (cbioportal-frontend#4938 #10921)

📘 Documentation

• add mutational signatures to news @tmazor (#10930)
• Fix broken link in FAQ @jamesqo (#10924)
• Add NCI-CRDC TCGA and CPTAC studies to news release @rmadupuri (#10910)
• Update FAQ for Upcoming GDC Data Release @jamesqo (#10894)
• Update docker compose related documentation @dippindots (#10939)

🧰 Maintenance

• fix localStorage.frontendConfig being clobbered when localhost:3000 testing @pappde (cbioportal-frontend#4955)

👷‍♀️ Testing, Configuration & Deployment

• Fix docker compose deprecation issue @dippindots (#10939)

📦 Package Improvements

• Update Genome Nexus API client to include Alpha Missense @leexgh (cbioportal-frontend#4962)

🕵️‍♀️ Full commit logs

• Backend: v6.0.14...v6.0.15
• Frontend: cBioPortal/cbioportal-frontend@v6.0.14...v6.0.15

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning

v6.0.14

✨ Enhancements

• Show summary stats on homepage @Nelliney (cbioportal-frontend#4952)

👷‍♀️ Testing, Configuration & Deployment

• Fix web and data image build @inodb (#10913)

🕵️‍♀️ Full commit logs

• Backend: v6.0.13...v6.0.14
• Frontend: cBioPortal/cbioportal-frontend@v6.0.13...v6.0.14

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning

v6.0.13

✨ Enhancements

• RFC83: Make virtual study available for all users on their landing pages @forus (cbioportal-frontend#4923)

🐛 Bug Fixes

• Switch off spring security on public VS endpoints @forus (#10893)

👷‍♀️ Testing, Configuration & Deployment

• move sync to async for all remote tests @bemijonathan (cbioportal-frontend#4920)

📘 Documentation

• Add Incremental Data Loading Documentation @forus (#10816)

🕵️‍♀️ Full commit logs

• Backend: v6.0.12...v6.0.13
• Frontend: cBioPortal/cbioportal-frontend@v6.0.12...v6.0.13

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning

v6.0.12

🧬 Features

• RFC83: Add admin call to make virtual study available for all users on their landing pages @forus (#10829)

🐛 Bug Fixes

• Restrict proxy access to known hosts only @onursumer (#10884)
• Fix sorting in clinicaldata tab of study view @alisman (#10889)
• Fix submission of patient and sample ids @alisman (cbioportal-frontend#4943)

👷‍♀️ Testing, Configuration & Deployment

• Fix flaky e2e test on patient view line chart @gblaih (cbioportal-frontend#4947)
• Fix e2e tests after microbiome generic assay removed @alisman (cbioportal-frontend#4946)
• Update screenshots after oncokb data and clinical data tab column change @gblaih (cbioportal-frontend#4940)

🧰 Maintenance

• Always show the mutation aligner link for domains @onursumer (cbioportal-frontend#4942)
• Do not use proxy to fetch news @onursumer (cbioportal-frontend#4941)
• WSL setup updates - readme and gitignore for Visual Studio @pappde (cbioportal-frontend#4945)
• Regenerate api clients @alisman (cbioportal-frontend#4944)

🕵️‍♀️ Full commit logs

• Backend: v6.0.11...v6.0.12
• Frontend: cBioPortal/cbioportal-frontend@v6.0.11...v6.0.12

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning