Adding more data objects

cancer-genomics · Sep 9, 2024 · c48495f · c48495f
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diff --git a/data/02-artemis-delfi/Brain_Test.csv b/data/02-artemis-delfi/Brain_Test.csv
diff --git a/data/02-artemis-delfi/Brain_Train.csv b/data/02-artemis-delfi/Brain_Train.csv
diff --git a/data/02-artemis-delfi/Epi_Reference_Bins.csv b/data/02-artemis-delfi/Epi_Reference_Bins.csv
diff --git a/data/02-artemis-delfi/Expected.csv b/data/02-artemis-delfi/Expected.csv
diff --git a/data/03-targeted-sequencing/README.md b/data/03-targeted-sequencing/README.md
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+#### Fragment Lengths
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+The R object `fragment_lengths.rds` includes the fragment lengths for the mutant and wild-type alleles for tumor-specific and CHIP (Clonal hematopoiesis of indeterminate potential) mutations, as well as germline variants.
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+The fragment lengths are derived by extracting the insert size field from the targeted sequencing bam file.
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diff --git a/data/03-targeted-sequencing/fragment_lengths.rds b/data/03-targeted-sequencing/fragment_lengths.rds
diff --git a/data/04-decifer/all_tfs.rds b/data/04-decifer/all_tfs.rds
diff --git a/data/04-decifer/expression-stats-by-type.rds b/data/04-decifer/expression-stats-by-type.rds