first version

.gitignore

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+_site

Gemfile

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+source "https://rubygems.org"
+ruby RUBY_VERSION
+
+# Hello! This is where you manage which Jekyll version is used to run.
+# When you want to use a different version, change it below, save the
+# file and run `bundle install`. Run Jekyll with `bundle exec`, like so:
+#
+#     bundle exec jekyll serve
+#
+# This will help ensure the proper Jekyll version is running.
+# Happy Jekylling!
+gem "jekyll", "3.3.1"
+
+# This is the default theme for new Jekyll sites. You may change this to anything you like.
+gem "minima", "~> 2.0"
+
+# If you want to use GitHub Pages, remove the "gem "jekyll"" above and
+# uncomment the line below. To upgrade, run `bundle update github-pages`.
+# gem "github-pages", group: :jekyll_plugins
+
+# If you have any plugins, put them here!
+group :jekyll_plugins do
+   gem "jekyll-feed", "~> 0.6"
+end

Gemfile.lock

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+GEM
+  remote: https://rubygems.org/
+  specs:
+    addressable (2.5.0)
+      public_suffix (~> 2.0, >= 2.0.2)
+    colorator (1.1.0)
+    ffi (1.9.14)
+    forwardable-extended (2.6.0)
+    jekyll (3.3.1)
+      addressable (~> 2.4)
+      colorator (~> 1.0)
+      jekyll-sass-converter (~> 1.0)
+      jekyll-watch (~> 1.1)
+      kramdown (~> 1.3)
+      liquid (~> 3.0)
+      mercenary (~> 0.3.3)
+      pathutil (~> 0.9)
+      rouge (~> 1.7)
+      safe_yaml (~> 1.0)
+    jekyll-feed (0.8.0)
+      jekyll (~> 3.3)
+    jekyll-sass-converter (1.5.0)
+      sass (~> 3.4)
+    jekyll-watch (1.5.0)
+      listen (~> 3.0, < 3.1)
+    kramdown (1.13.1)
+    liquid (3.0.6)
+    listen (3.0.8)
+      rb-fsevent (~> 0.9, >= 0.9.4)
+      rb-inotify (~> 0.9, >= 0.9.7)
+    mercenary (0.3.6)
+    minima (2.1.0)
+      jekyll (~> 3.3)
+    pathutil (0.14.0)
+      forwardable-extended (~> 2.6)
+    public_suffix (2.0.4)
+    rb-fsevent (0.9.8)
+    rb-inotify (0.9.7)
+      ffi (>= 0.5.0)
+    rouge (1.11.1)
+    safe_yaml (1.0.4)
+    sass (3.4.23)
+
+PLATFORMS
+  ruby
+
+DEPENDENCIES
+  jekyll (= 3.3.1)
+  jekyll-feed (~> 0.6)
+  minima (~> 2.0)
+
+RUBY VERSION
+   ruby 2.0.0p648
+
+BUNDLED WITH
+   1.13.7

_config.yml

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+# Welcome to Jekyll!
+#
+# This config file is meant for settings that affect your whole blog, values
+# which you are expected to set up once and rarely edit after that. If you find
+# yourself editing this file very often, consider using Jekyll's data files
+# feature for the data you need to update frequently.
+#
+# For technical reasons, this file is *NOT* reloaded automatically when you use
+# 'bundle exec jekyll serve'. If you change this file, please restart the server process.
+
+# Site settings
+# These are used to personalize your new site. If you look in the HTML files,
+# you will see them accessed via {{ site.title }}, {{ site.email }}, and so on.
+# You can create any custom variable you would like, and they will be accessible
+# in the templates via {{ site.myvariable }}.
+title: Charles Sutton Resaerch
+email: [email protected]
+description: > # this means to ignore newlines until "baseurl:"
+  Research page of Charles Sutton. Research in machine learning, natural language processing,
+  conditional random fields, deep learning, software engineering, and programming languages.
+baseurl: "/csutton" # the subpath of your site, e.g. /blog
+url: "http://homepages.inf.ed.ac.uk" # the base hostname & protocol for your site, e.g. http://example.com
+twitter_username: RandomlyWalking
+github_username:  casutton
+
+# Build settings
+markdown: kramdown
+theme: minima
+gems:
+  - jekyll-feed
+exclude:
+  - Gemfile
+  - Gemfile.lock

_includes/egg.html

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+<LINK REL="stylesheet" TYPE="text/css" HREF="css/home-std.css" TITLE="standard">
+<LINK REL="alternate stylesheet" TYPE="text/css" HREF="css/home-red.css" TITLE="red">
+<LINK REL="alternate stylesheet" TYPE="text/css" HREF="css/home-bw.css" TITLE="bw">
+<script src="js/egg.js"></script>
+

_includes/footer.html

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+<footer class="footer footer-gray">
+  <div class="container">
+    <p class="text-muted">Made using <a href="https://jekyllrb.com">Jekyll</a>. See <a href="todo">source</a>.</p>
+  </div>
+</footer>
+

_includes/navbar.html

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+<nav class="navbar navbar-inverse navbar-static-top">
+      <div class="container">
+        <div class="navbar-header">
+          <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false" aria-controls="navbar">
+            <span class="sr-only">Toggle navigation</span>
+            <span class="icon-bar"></span>
+            <span class="icon-bar"></span>
+            <span class="icon-bar"></span>
+          </button>
+          <a href="/csutton/"><span class="navbar-brand"><span class="navbar-brand-font">Charles Sutton</span></span></a>
+	</div>
+        <div id="navbar" class="collapse navbar-collapse">
+          <ul class="nav navbar-nav">
+            <li><a href="/csutton/publications.html"><span class="navbar-font">Publications</span></a></li>
+            <li><a href="/csutton/talks/"><span class="navbar-font">Talks</span></a></li>
+            <li><a href="/csutton/software.html"><span class="navbar-font">Software</span></a></li>
+            <li><a href="/csutton/advice/"><span class="navbar-font">Advice</span></a></li>
+            <li><a href="/csutton/news/"><span class="navbar-font">News</span></a></li>
+            <li><a href="http://www.theexclusive.org/"><span class="navbar-font">Blog</span></a></li>
+	  </ul>
+	  <ul class="nav navbar-nav navbar-right navbar-social">
+		<li><a href="https://github.com/casutton/"><i class="fa fa-github fa-navbar" aria-hidden="true"></i></a></li>
+		<li><a href="https://twitter.com/RandomlyWalking"><i class="fa fa-twitter fa-navbar" aria-hidden="true"></i></a></li>
+		<li><a href="http://scholar.google.co.uk/citations?user=hYtGXD0AAAAJ&hl=en"><i class="fa fa-google" aria-hidden="true"></i></a></li>
+		<li><a href="/csutton/#contact"><i class="fa fa-envelope-open fa-navbar" aria-hidden="true"></i></a></li>
+          </ul>
+	</div><!--/.nav-collapse -->
+      </div>
+</nav>