- 👋 Hi, this is Costas Bouyioukos (or @cbouyio) an assistant professor of bioinformatics at the Université Paris Cité (or ex Université de Paris, or ex Université Paris Diderot - Paris VII)
- 👀 I’m working in a broad range of bioinformatics, computational and systems biology approaches, developing tools and methods for multi-omics and regulatory analysis and machine/deep learning applications to biology
- 👀 I manage the @parispeigenetics (https://github.com/parisepigenetics) GitHub organisation for research projects in the department of epigenetics and the @UParisCit-bioinfo (https://github.com/ParisDiderot-Bioinfo) for my teaching
- 🌱 I’m currently learning, deepML models architecture for multi-omics analyses problems
- 💞️ I’m looking to collaborate on, computational methods for metagenomics and single cell analyses as well as 3-dimensional data representation and visualisation
- 💞️ I'm always particularly interested in complex biological networks modelling and reconstriction
- 📫 How to reach me: [email protected] personal email, [email protected] professional email

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Universite Paris CIte and BFA. CNRS UMR 8251 - ERL INSERM U1133
- Paris, France
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20:51
(UTC +02:00) - in/costasbouyioukos
- @cbouyio.bsky.social
- https://orcid.org/0000-0002-7443-3736
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parisepigenetics/great_3d
parisepigenetics/great_3d PublicA tool for the analysis and visualisation of 3d genome structure, epigenetics and gene expression.
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parisepigenetics/riboproanalysis
parisepigenetics/riboproanalysis PublicA comprehensive, best practices, pipeline for Ribo-seq experiments data analysis
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parisepigenetics/rna_feat_ext
parisepigenetics/rna_feat_ext PublicSoftware tools to extract mRNA's features from a list of ENSEMBL gene IDs.
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parisepigenetics/pyna-colada
parisepigenetics/pyna-colada PublicPina colada is a python application using 'straw' and 'juice-tools' to provide an more useful API to work with .hic Hi-C experiments files.
Python
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shiny-your-gene-list
shiny-your-gene-list PublicAn R-shiny interactive application to explore and valorise gene sets and lists from high throughput genomics experiments.
R 1
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DU-Bii/module-6-Integrative-Bioinformatics
DU-Bii/module-6-Integrative-Bioinformatics PublicIntegrative bioinformatics course of the Diplôme Universitaire en Bioinformatique Integrative (DU-Bii)
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