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@Claptar Claptar released this 25 Feb 11:59
· 3 commits to main since this release
25-056
201911f
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Learn about vigilant mode.

Description

We are excited to announce a new version of the cellbender repository. This release includes several updates and improvements to enhance the functionality and performance of the pipeline.

Updates

  • Pipeline Support: Added support for cellbender versions 0.3.2 and 0.2.2.
  • New Parameters: Introduced additional parameters such as min_umi and exclude_features.
  • Improved Configuration:
    • Enhanced nextflow.config settings for nextflow processes.
    • Only the cellbender process uses the --nv option for the Singularity container now.
    • Jobs are now submitted in arrays.
  • Deprecation: Removed explicit usage of params in the processes as it is deprecated.
  • Documentation: Updated the README.md file with the latest information.
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