Merge pull request #68 from Louis-MG/main

added Dockerfile to get CheckM2 in docker and singularity

docker/Dockerfile

@@ -0,0 +1,13 @@
+FROM ubuntu:focal
+ENV DEBIAN_FRONTEND=noninteractive
+
+RUN apt-get update \
+    && apt install -y git python3-pip prodigal diamond-aligner \
+    && pip3 install setuptools wheel requests packaging tqdm \    
+    && pip3 install protobuf==3.20.* scikit-learn==0.23.2 h5py==2.10.0 numpy==1.19.2 tensorflow==2.5.0 lightgbm==3.2.1 pandas==1.4.0 scipy==1.8.0
+
+RUN git clone --recursive https://github.com/chklovski/checkm2.git && cd checkm2 \
+    && python3 setup.py install
+
+ENV PATH="$HOME/.local/bin:$PATH"
+CMD checkm2