add py3.11, py3.12

cokelaer · Oct 17, 2024 · 28cd1d7 · 28cd1d7
1 parent 79320f1
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diff --git a/.github/workflows/arrayexpress.yml b/.github/workflows/arrayexpress.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/bigg.yml b/.github/workflows/bigg.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/biodbnet.yml b/.github/workflows/biodbnet.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/biogrid.yml b/.github/workflows/biogrid.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/biomart.yml b/.github/workflows/biomart.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/biomodels.yml b/.github/workflows/biomodels.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/chebi.yml b/.github/workflows/chebi.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/chembl.yml b/.github/workflows/chembl.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -23,7 +23,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [3.7, 3.8, 3.9, '3.10']
+        python: ['3.8', '3.9', '3.10', '3.11', '3.12']
       fail-fast: false
 
 

diff --git a/.github/workflows/cog.yml b/.github/workflows/cog.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/dbfetch.yml b/.github/workflows/dbfetch.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/ena.yml b/.github/workflows/ena.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/ensembl.yml b/.github/workflows/ensembl.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/eutils.yml b/.github/workflows/eutils.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/eva.yml b/.github/workflows/eva.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/hgnc.yml b/.github/workflows/hgnc.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/intact_complex.yml b/.github/workflows/intact_complex.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/kegg.yml b/.github/workflows/kegg.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/muscle.yml b/.github/workflows/muscle.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/mygeneinfo.yml b/.github/workflows/mygeneinfo.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/ncbiblast.yml b/.github/workflows/ncbiblast.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/omicsdi.yml b/.github/workflows/omicsdi.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/omnipath.yml b/.github/workflows/omnipath.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/panther.yml b/.github/workflows/panther.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/pathwaycommons.yml b/.github/workflows/pathwaycommons.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/pdb.yml b/.github/workflows/pdb.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/pdbe.yml b/.github/workflows/pdbe.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/pfam.yml b/.github/workflows/pfam.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/pride.yml b/.github/workflows/pride.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/psicquic.yml b/.github/workflows/psicquic.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/pubchem.yml b/.github/workflows/pubchem.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/quickgo.yml b/.github/workflows/quickgo.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/reactome.yml b/.github/workflows/reactome.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/rhea.yml b/.github/workflows/rhea.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/seqret.yml b/.github/workflows/seqret.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/template.txt b/.github/workflows/template.txt
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/unichem.yml b/.github/workflows/unichem.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/uniprot.yml b/.github/workflows/uniprot.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/.github/workflows/wikipathway.yml b/.github/workflows/wikipathway.yml
@@ -20,7 +20,7 @@ jobs:
     strategy:
       max-parallel: 5
       matrix:
-        python: [ 3.8, 3.9,'3.10']
+        python: [3.8, 3.9,'3.10' '3.11', '3.12']
       fail-fast: false
 
     steps:

diff --git a/README.rst b/README.rst
@@ -28,7 +28,7 @@ BIOSERVICES: access to biological web services programmatically
 
 
 
-:Python_version_available: BioServices is tested for Python 3.7, 3.8, 3.9, 3.10
+:Python_version_available: BioServices is tested for Python 3.9, 3.10, 3.11, 3.12
 :Contributions: Please join https://github.com/cokelaer/bioservices 
 :Issues: Please use https://github.com/cokelaer/bioservices/issues
 :How to cite: Cokelaer et al. *BioServices: a common Python package to access biological Web Services programmatically*
@@ -199,6 +199,7 @@ Version   Description
 ========= ====================================================================
 1.13.0    * Fix pyproject missing requirements
           * Fix pkg_resources warning
+          * drop python 3.8, add py3.12
 1.12.0    * migrating to pyproject
 1.11.2    * Update COG service to be more user-friendly and return all pages
             by default

diff --git a/pyproject.toml b/pyproject.toml
@@ -23,6 +23,7 @@ classifiers = [
         "Programming Language :: Python :: 3.9",
         "Programming Language :: Python :: 3.10",
         "Programming Language :: Python :: 3.11",
+        "Programming Language :: Python :: 3.12",
         "Topic :: Software Development :: Libraries :: Python Modules",
         "Topic :: Scientific/Engineering :: Bio-Informatics",
         "Topic :: Scientific/Engineering :: Information Analysis",