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[WIP] Hiveplots workflow demo & tool descriptions #44

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@mr-c mr-c commented Dec 12, 2015

  • vawk
  • vcftobedpe from hall-lab-svtools
  • dumb workflow
  • useful workflow
  • sample data
  • tool metadata

https://github.com/brainstorm/cancer-hiveplots/blob/master/hiveplots.ipynb

inputBinding:
position: 2

stdout:
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It is a good practice to provide output file name for stdout
draft2 example:

inputs:
  - id: '#stdoutfile'
    type: string
outputs:
  - id: '#stdoutfile'
    type: File
    outputBinding:
      glob:
        engine: 'cwl:JsonPointer'
        script: /job/stdoutfile
stdout:
  engine: 'cwl:JsonPointer'
  script: /job/stdoutfile

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3 participants