A python package for the extraction and analysis of graphs from 2D and 3D experimental micrographs. Image processing techniques taken from StructuralGT.
StructuralGT is available on conda-forge for the linux-64, osx-64, and win-64 architectures. Install with
conda install conda-forge::structuralgtStructuralGT can also be built from source, via the [public repository](https://github.com/compass-stc/StructuralGT). Prior to install, you will need to install some dependencies into your conda environment. Note that installation will most likely be successful if carried out in a new conda environment. While it is posisble to obtain some of these dependencies with pip, installation will most likely be sucessful when all dependencies are obtained with conda.
git clone https://github.com/compass-stc/StructuralGT.git
conda install eigen igraph cython tbb tbb-devel numpy cython scikit-build cmake
cd StructuralGT
python3 -m pip install .You can verify successful installation by installing pytest and running the included tests:
conda install pytest
pytestFor a tutorial on the software's use, consult our [examples repository](https://github.com/compass-stc/StructuralGT-Examples).
To extend the above examples to novel analysis in your own work, you should consult the documentation, which is avaiable at ... . You can also build the documentation from source.