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@compomics

Computational Omics and Systems Biology Group

The CompOmics group, headed by Prof. Dr. Lennart Martens, specializes in the management, analysis and integration of high-throughput Omics data.

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  1. ThermoRawFileParser ThermoRawFileParser Public

    Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

    C# 202 50

  2. DeepLC DeepLC Public

    DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

    Python 59 20

  3. ms2rescore ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    Python 55 17

  4. compomics-utilities compomics-utilities Public

    Open source Java library for computational proteomics

    Java 32 17

  5. peptide-shaker peptide-shaker Public

    Interpretation of proteomics identification results

    Java 48 18

  6. searchgui searchgui Public

    Highly adaptable common interface for proteomics search and de novo engines

    Java 43 15

Repositories

Showing 10 of 97 repositories
  • ThermoRawFileParser Public

    Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

    compomics/ThermoRawFileParser’s past year of commit activity
    C# 202 Apache-2.0 50 15 0 Updated Mar 11, 2025
  • iDeepLC Public
    compomics/iDeepLC’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Mar 11, 2025
  • searchgui Public

    Highly adaptable common interface for proteomics search and de novo engines

    compomics/searchgui’s past year of commit activity
    Java 43 15 16 (11 issues need help) 0 Updated Mar 11, 2025
  • lesSDRF Public
    compomics/lesSDRF’s past year of commit activity
    Jupyter Notebook 6 Apache-2.0 8 3 2 Updated Mar 11, 2025
  • ms2pip Public

    MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.

    compomics/ms2pip’s past year of commit activity
    HTML 42 Apache-2.0 18 5 1 Updated Mar 11, 2025
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    compomics/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,416 0 0 Updated Mar 7, 2025
  • compomics.github.io Public

    Compomics github website.

    compomics/compomics.github.io’s past year of commit activity
    SCSS 0 MIT 1 0 0 Updated Mar 7, 2025
  • psm_utils Public

    Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

    compomics/psm_utils’s past year of commit activity
    Python 26 Apache-2.0 9 6 (2 issues need help) 0 Updated Mar 6, 2025
  • Peptonizer2000 Public

    Confidence for taxonomic analysis in metaproteomics. Get ready to peptonize!

    compomics/Peptonizer2000’s past year of commit activity
    Python 1 Apache-2.0 0 3 0 Updated Mar 6, 2025
  • IM2Deep Public

    Collisional cross-section prediction for modified peptides

    compomics/IM2Deep’s past year of commit activity
    Python 8 Apache-2.0 0 0 0 Updated Feb 27, 2025
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