Christy Rollinson ([email protected]) 10 March, 2016
This folder contains all of the scripts necessary to execute the PalEON MIP Phase 2 regional runs on a cell-by-cell basis. For this to work properly, there are several steps necessary to format files, perform the spinup (3 stages), and complete the runs. Details about each of the steps is now located in the github wiki.
The master branch of this repository is configured for Boston University's geo computing cluster. Please create a new branch for new computing locations. A list of required programs & libraries for running ED and the PalEON-specific helper scripts are below.
Note: This repository also has the base scripts for the site-level runs, but many of the file paths will not line up since this repository was made with the intention of helping distribute the effort for the regional runs
- hdf5 (v1.6.10 or greater)
- fortran openmpi compiler
- nco
- R
- packages: ncdf4, zoo, raster, ggplot2, abind, rhdf5, chron, colorspace
- rhdf5 will need to be installed from Bioconductor: http://bioconductor.org/packages/release/bioc/html/rhdf5.html