GitHub - darrenjw/dsmts: Discrete stochastic models test suite

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Name	Name	Last commit message	Last commit date
Latest commit darrenjw Merge pull request #2 from fbergmann/master Dec 11, 2019 e79fd58 · Dec 11, 2019 History 28 Commits
paper	paper	Second time lucky	Feb 20, 2008
.gitignore	.gitignore	- add ignore file	Dec 3, 2019
Makefile	Makefile	Adding changes suggested by Sean Mauche	Oct 19, 2010
README-DEVELOPERS.txt	README-DEVELOPERS.txt	tweaks to READMEs	Mar 26, 2009
README.txt	README.txt	removed unused variables from README.txt	Oct 17, 2015
build.csh	build.csh	Second time lucky	Feb 20, 2008
dsmts-001-01-mean.csv	dsmts-001-01-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-01-sd.csv	dsmts-001-01-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-01.mod	dsmts-001-01.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-02-mean.csv	dsmts-001-02-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-02-sd.csv	dsmts-001-02-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-02.mod	dsmts-001-02.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-03-mean.csv	dsmts-001-03-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-03-sd.csv	dsmts-001-03-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-03.mod	dsmts-001-03.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-04-mean.csv	dsmts-001-04-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-04-sd.csv	dsmts-001-04-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-04.mod	dsmts-001-04.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-05-mean.csv	dsmts-001-05-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-05-sd.csv	dsmts-001-05-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-05.mod	dsmts-001-05.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-06-mean.csv	dsmts-001-06-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-06-sd.csv	dsmts-001-06-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-06.mod	dsmts-001-06.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-07-mean.csv	dsmts-001-07-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-07-sd.csv	dsmts-001-07-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-07.mod	dsmts-001-07.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-08-mean.csv	dsmts-001-08-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-08-sd.csv	dsmts-001-08-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-08.mod	dsmts-001-08.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-09-mean.csv	dsmts-001-09-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-09-sd.csv	dsmts-001-09-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-09.mod	dsmts-001-09.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-10-mean.csv	dsmts-001-10-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-10-sd.csv	dsmts-001-10-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-10.mod	dsmts-001-10.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-11-mean.csv	dsmts-001-11-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-11-sd.csv	dsmts-001-11-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-11.mod	dsmts-001-11.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-12-mean.csv	dsmts-001-12-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-12-sd.csv	dsmts-001-12-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-12.mod	dsmts-001-12.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-13-mean.csv	dsmts-001-13-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-13-sd.csv	dsmts-001-13-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-13.mod	dsmts-001-13.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-14-mean.csv	dsmts-001-14-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-14-sd.csv	dsmts-001-14-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-14.mod	dsmts-001-14.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-15-mean.csv	dsmts-001-15-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-15-sd.csv	dsmts-001-15-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-15.mod	dsmts-001-15.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-16-mean.csv	dsmts-001-16-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-16-sd.csv	dsmts-001-16-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-16.mod	dsmts-001-16.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-17-mean.csv	dsmts-001-17-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-17-sd.csv	dsmts-001-17-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-17.mod	dsmts-001-17.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-18-mean.csv	dsmts-001-18-mean.csv	Second time lucky	Feb 20, 2008
dsmts-001-18-sd.csv	dsmts-001-18-sd.csv	Second time lucky	Feb 20, 2008
dsmts-001-18.mod	dsmts-001-18.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-001-19-mean.csv	dsmts-001-19-mean.csv	new model containing an assignment rule	Mar 26, 2009
dsmts-001-19-sd.csv	dsmts-001-19-sd.csv	new model containing an assignment rule	Mar 26, 2009
dsmts-001-19.mod	dsmts-001-19.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-002-01-mean.csv	dsmts-002-01-mean.csv	Second time lucky	Feb 20, 2008
dsmts-002-01-sd.csv	dsmts-002-01-sd.csv	Second time lucky	Feb 20, 2008
dsmts-002-01.mod	dsmts-002-01.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-002-02-mean.csv	dsmts-002-02-mean.csv	Second time lucky	Feb 20, 2008
dsmts-002-02-sd.csv	dsmts-002-02-sd.csv	Second time lucky	Feb 20, 2008
dsmts-002-02.mod	dsmts-002-02.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-002-03-mean.csv	dsmts-002-03-mean.csv	Second time lucky	Feb 20, 2008
dsmts-002-03-sd.csv	dsmts-002-03-sd.csv	Second time lucky	Feb 20, 2008
dsmts-002-03.mod	dsmts-002-03.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-002-04-mean.csv	dsmts-002-04-mean.csv	Second time lucky	Feb 20, 2008
dsmts-002-04-sd.csv	dsmts-002-04-sd.csv	Second time lucky	Feb 20, 2008
dsmts-002-04.mod	dsmts-002-04.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-002-05-mean.csv	dsmts-002-05-mean.csv	Second time lucky	Feb 20, 2008
dsmts-002-05-sd.csv	dsmts-002-05-sd.csv	Second time lucky	Feb 20, 2008
dsmts-002-05.mod	dsmts-002-05.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-002-06-mean.csv	dsmts-002-06-mean.csv	Second time lucky	Feb 20, 2008
dsmts-002-06-sd.csv	dsmts-002-06-sd.csv	Second time lucky	Feb 20, 2008
dsmts-002-06.mod	dsmts-002-06.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-002-07-mean.csv	dsmts-002-07-mean.csv	Second time lucky	Feb 20, 2008
dsmts-002-07-sd.csv	dsmts-002-07-sd.csv	Second time lucky	Feb 20, 2008
dsmts-002-07.mod	dsmts-002-07.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-002-08-mean.csv	dsmts-002-08-mean.csv	Second time lucky	Feb 20, 2008
dsmts-002-08-sd.csv	dsmts-002-08-sd.csv	Second time lucky	Feb 20, 2008
dsmts-002-08.mod	dsmts-002-08.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-002-09-mean.csv	dsmts-002-09-mean.csv	added in 2 models with timed events into the 002 series. not yet tested	Apr 8, 2008
dsmts-002-09-sd.csv	dsmts-002-09-sd.csv	added in 2 models with timed events into the 002 series. not yet tested	Apr 8, 2008
dsmts-002-09.mod	dsmts-002-09.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-002-10-mean.csv	dsmts-002-10-mean.csv	added in 2 models with timed events into the 002 series. not yet tested	Apr 8, 2008
dsmts-002-10-sd.csv	dsmts-002-10-sd.csv	added in 2 models with timed events into the 002 series. not yet tested	Apr 8, 2008
dsmts-002-10.mod	dsmts-002-10.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-003-01-mean.csv	dsmts-003-01-mean.csv	Second time lucky	Feb 20, 2008
dsmts-003-01-sd.csv	dsmts-003-01-sd.csv	Second time lucky	Feb 20, 2008
dsmts-003-01.mod	dsmts-003-01.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-003-02-mean.csv	dsmts-003-02-mean.csv	Second time lucky	Feb 20, 2008
dsmts-003-02-sd.csv	dsmts-003-02-sd.csv	Second time lucky	Feb 20, 2008
dsmts-003-02.mod	dsmts-003-02.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-003-03-mean.csv	dsmts-003-03-mean.csv	Second time lucky	Feb 20, 2008
dsmts-003-03-sd.csv	dsmts-003-03-sd.csv	Second time lucky	Feb 20, 2008
dsmts-003-03.mod	dsmts-003-03.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-003-04-mean.csv	dsmts-003-04-mean.csv	updated analysis of 003-04	Aug 20, 2015
dsmts-003-04-sd.csv	dsmts-003-04-sd.csv	updated analysis of 003-04	Aug 20, 2015
dsmts-003-04.mod	dsmts-003-04.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-003-05-mean.csv	dsmts-003-05-mean.csv	Second time lucky	Feb 20, 2008
dsmts-003-05-sd.csv	dsmts-003-05-sd.csv	Second time lucky	Feb 20, 2008
dsmts-003-05.mod	dsmts-003-05.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-003-06-mean.csv	dsmts-003-06-mean.csv	Second time lucky	Feb 20, 2008
dsmts-003-06-sd.csv	dsmts-003-06-sd.csv	Second time lucky	Feb 20, 2008
dsmts-003-06.mod	dsmts-003-06.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-003-07-mean.csv	dsmts-003-07-mean.csv	Second time lucky	Feb 20, 2008
dsmts-003-07-sd.csv	dsmts-003-07-sd.csv	Second time lucky	Feb 20, 2008
dsmts-003-07.mod	dsmts-003-07.mod	Adding changes suggested by Sean Mauche	Oct 19, 2010
dsmts-004-01-mean.csv	dsmts-004-01-mean.csv	Second time lucky	Feb 20, 2008
dsmts-004-01-sd.csv	dsmts-004-01-sd.csv	Second time lucky	Feb 20, 2008
dsmts-004-01.mod	dsmts-004-01.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-004-02-mean.csv	dsmts-004-02-mean.csv	Second time lucky	Feb 20, 2008
dsmts-004-02-sd.csv	dsmts-004-02-sd.csv	Second time lucky	Feb 20, 2008
dsmts-004-02.mod	dsmts-004-02.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-004-03-mean.csv	dsmts-004-03-mean.csv	Second time lucky	Feb 20, 2008
dsmts-004-03-sd.csv	dsmts-004-03-sd.csv	Second time lucky	Feb 20, 2008
dsmts-004-03.mod	dsmts-004-03.mod	first stab at a level 3, version 1 issue of the dsmts	May 2, 2010
dsmts-models.tex	dsmts-models.tex	Minor formatting	Oct 19, 2010
dsmts-userguide.tex	dsmts-userguide.tex	Minor formatting	Oct 19, 2010
genplots.R	genplots.R	Second time lucky	Feb 20, 2008
mod2sbml.py	mod2sbml.py	- make mod2sbml run with python 3x	Dec 3, 2019
test-fern.R	test-fern.R	tweak for new fern script including events...	Apr 28, 2008
test-gillespie2.R	test-gillespie2.R	Second time lucky	Feb 20, 2008

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The Discrete Stochastic Model Test Suite consists of a series of SBML
models together with brief descriptions of each one, and time-course
data which may be used to test the output from discrete stochastic
simulators.  

See the user guide in the file "dsmts-userguide.pdf" for further
information about the suite.

The latest version of the Test Suite is available at:

https://github.com/darrenjw/dsmts

together with credits and further information about how it should be
used.

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