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@datajoint

DataJoint

Open-source tools for computational data pipelines.
README.md

Welcome to DataJoint!

DataJoint for Python is an open-source framework for scientific data pipelines based on the relational data model. DataJoint prescribes a consistent method for organizing, populating, computing, and querying data.

In this GitHub Organization, you will find the source code for DataJoint, as well as tutorials and example pipelines.

Data Pipeline Example

pipeline

Yatsenko et al., bioRxiv 2021

Getting Started

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  1. datajoint-python datajoint-python Public

    Relational data pipelines for the science lab

    Python 171 85

  2. datajoint-tutorials datajoint-tutorials Public

    Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples

    Jupyter Notebook 10 123

  3. element-array-ephys element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    Python 5 34

  4. element-calcium-imaging element-calcium-imaging Public

    DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT

    Jupyter Notebook 9 42

Repositories

Showing 10 of 90 repositories
  • pharus Public

    Pharus is a generic REST API server backend for DataJoint pipelines built on top of flask, datajoint, and pyjwt.

    datajoint/pharus’s past year of commit activity
    Python 3 MIT 16 16 (2 issues need help) 1 Updated Nov 15, 2024
  • nginx-docker Public
    datajoint/nginx-docker’s past year of commit activity
    Python 0 5 1 0 Updated Nov 11, 2024
  • element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    datajoint/element-array-ephys’s past year of commit activity
    Python 5 MIT 34 26 (2 issues need help) 1 Updated Nov 4, 2024
  • element-event Public

    DataJoint Element for event-based behavior experiments

    datajoint/element-event’s past year of commit activity
    Python 0 MIT 18 3 0 Updated Oct 25, 2024
  • datajoint-python Public

    Relational data pipelines for the science lab

    datajoint/datajoint-python’s past year of commit activity
    Python 171 LGPL-2.1 85 125 3 Updated Oct 11, 2024
  • element-interface Public

    Common functions for the DataJoint Elements

    datajoint/element-interface’s past year of commit activity
    Python 3 MIT 17 9 (1 issue needs help) 2 Updated Oct 1, 2024
  • element-optogenetics Public

    DataJoint Element for optogenetic experiments

    datajoint/element-optogenetics’s past year of commit activity
    Jupyter Notebook 0 MIT 8 0 0 Updated Oct 1, 2024
  • element-animal Public

    DataJoint Element for animal management

    datajoint/element-animal’s past year of commit activity
    Python 2 MIT 18 0 1 Updated Oct 1, 2024
  • element-lab Public

    DataJoint Element for lab management

    datajoint/element-lab’s past year of commit activity
    Python 2 MIT 16 2 0 Updated Oct 1, 2024
  • element-session Public

    DataJoint Element for session management

    datajoint/element-session’s past year of commit activity
    Python 2 MIT 18 1 0 Updated Sep 27, 2024
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