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modify ctest script #16

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modify ctest script

modify ctest script #16

Workflow file for this run

.github/workflows/linux.yml at 513f5a4
name: github-linux
on: [push, pull_request]
concurrency:
group: ${ {github.event_name }}-${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: ${{github.event_name == 'pull_request'}}
permissions:
contents: read
jobs:
linux-release-serial:
# simple serial release build using g++
name: linux release serial
runs-on: [ubuntu-20.04]
steps:
- uses: actions/checkout@v3
- name: setup
run: |
./contrib/utilities/download_clang_format
- name: info
run: |
g++ -v
cmake --version
- name: modules
run: |
sudo apt-get install g++-10
- name: Build Boost
id: boost
uses: egor-tensin/build-boost@v1
with:
version: 1.74.0
libraries: container iostreams python serialization system thread
platform: x64
configuration: Release
- name: configure deal.II
run: |
mkdir build
cd build
cmake -D BOOST_DIR=/home/runner/work/dealii/boost \
-D BOOST_INCLUDEDIR=/home/runner/work/dealii/boost \
-D BOOST_LIBRARYDIR=/home/runner/work/dealii/boost/stage/x64/Release/lib \
-D CMAKE_BUILD_TYPE=Release \
-D CMAKE_CXX_COMPILER=g++-10 \
-D DEAL_II_CXX_FLAGS='-Werror -std=c++20' \
-D DEAL_II_EARLY_DEPRECATIONS=ON \
-DDEAL_II_COMPONENT_PYTHON_BINDINGS=ON \
..
- name: print detailed.log
run: cat build/detailed.log
- name: build
run: |
cd build
make VERBOSE=1 -j2
- name: quicktest
run: |
cd build
make test
linux-debug-parallel-simplex:
# simple parallel debug build using g++ with simplex configuration enabled
name: linux debug parallel simplex
runs-on: [ubuntu-22.04]
container:
image: dealii/dependencies:jammy
options: --user root --env OMPI_ALLOW_RUN_AS_ROOT=1 --env OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
steps:
- uses: actions/checkout@v3
- name: info
run: |
mpicc -v
cmake --version
- name: configure deal.II
run: |
mkdir build
cd build
cmake -D CMAKE_BUILD_TYPE=Debug \
-D DEAL_II_CXX_FLAGS='-Werror -std=c++17' \
-D DEAL_II_EARLY_DEPRECATIONS=ON \
-D DEAL_II_WITH_CGAL="ON" \
-D DEAL_II_WITH_MPI="ON" \
-D DEAL_II_WITH_TRILINOS="ON" \
-D DEAL_II_WITH_PETSC="ON" \
-D DEAL_II_WITH_METIS="ON" \
-D DEAL_II_WITH_HDF5="ON" \
-D DEAL_II_WITH_VTK="ON" \
-D DEAL_II_COMPONENT_EXAMPLES="OFF" \
..
- name: print detailed.log
run: cat build/detailed.log
- name: build
run: |
cd build
make VERBOSE=1 -j2
- name: test
run: |
# Remove warning: "A high-performance Open MPI point-to-point
# messaging module was unable to find any relevant network
# interfaces."
export OMPI_MCA_btl_base_warn_component_unused='0'
cd build
make -j2 setup_tests_simplex
ctest --output-on-failure -j2
- name: failed test log
if: ${{ failure() }}
uses: actions/upload-artifact@v3
with:
name: test-log
path: |
build/tests/**/*output*
build/tests/**/*stdout*
linux-debug-cuda-11:
# simple parallel debug build using cuda-11
name: linux debug cuda-11
runs-on: [ubuntu-20.04]
env:
CUDA_ROOT: /usr/local/cuda
steps:
- uses: actions/checkout@v3
- name: modules
run: |
wget https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/cuda-ubuntu2004.pin
sudo mv cuda-ubuntu2004.pin /etc/apt/preferences.d/cuda-repository-pin-600
sudo apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/3bf863cc.pub
sudo add-apt-repository "deb http://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/ /"
sudo apt-get install -y software-properties-common
sudo add-apt-repository ppa:ginggs/deal.ii-9.4.0-backports
sudo apt-get update
sudo apt-get install -yq --no-install-recommends \
cuda-toolkit-11-8 \
libp4est-dev \
libopenmpi-dev \
numdiff \
openmpi-bin \
libboost-all-dev
- name: info
run: |
mpicc -v
cmake --version
- uses: actions/checkout@v3
with:
repository: kokkos/kokkos
ref: 3.7.00
path: kokkos
- name: compile and install kokkos
working-directory: kokkos
run: |
mkdir build
cd build
cmake -D BUILD_SHARED_LIBS=ON \
-D CMAKE_CXX_COMPILER=${GITHUB_WORKSPACE}/kokkos/bin/nvcc_wrapper \
-D CMAKE_INSTALL_PREFIX=${GITHUB_WORKSPACE}/../kokkos-install \
-D Kokkos_ENABLE_CUDA=ON \
-D Kokkos_ENABLE_CUDA_LAMBDA=ON \
-D Kokkos_ENABLE_CUDA_CONSTEXPR=ON \
-D Kokkos_ARCH_VOLTA70=ON \
..
make install
- name: configure deal.II
run: |
mkdir build
cd build
cmake -D CMAKE_BUILD_TYPE=Debug \
-D CMAKE_CXX_COMPILER=${GITHUB_WORKSPACE}/kokkos/bin/nvcc_wrapper \
-D DEAL_II_CXX_FLAGS='-Werror -Wno-non-template-friend' \
-D DEAL_II_EARLY_DEPRECATIONS=ON \
-D DEAL_II_WITH_CUDA="ON" \
-D DEAL_II_WITH_KOKKOS="ON" \
-D KOKKOS_DIR=${GITHUB_WORKSPACE}/../kokkos-install \
-D DEAL_II_WITH_MPI="ON" \
-D DEAL_II_MPI_WITH_DEVICE_SUPPORT="ON" \
-D DEAL_II_WITH_P4EST="ON" \
-D DEAL_II_COMPONENT_EXAMPLES="ON" \
..
- name: print detailed.log
run: cat build/detailed.log
- name: build deal.II
run: |
cd build
make VERBOSE=1 -j2
- name: build CUDA tests
run: |
cd build
make -j2 setup_tests_cuda
cd tests/cuda
make -j2 compile_test_executables
linux-debug-cuda-11-clang:
# simple parallel debug build using cuda-11 and clang
name: linux debug cuda-11 clang
runs-on: [ubuntu-20.04]
env:
CUDA_ROOT: /usr/local/cuda
steps:
- uses: actions/checkout@v3
- name: modules
run: |
wget https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/cuda-ubuntu2004.pin
sudo mv cuda-ubuntu2004.pin /etc/apt/preferences.d/cuda-repository-pin-600
sudo apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/3bf863cc.pub
sudo add-apt-repository "deb http://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/ /"
sudo apt-get install -y software-properties-common
sudo add-apt-repository ppa:ginggs/deal.ii-9.4.0-backports
sudo apt-get update
sudo apt-get install -yq --no-install-recommends \
cuda-toolkit-11-0 \
libp4est-dev \
libopenmpi-dev \
llvm \
numdiff \
openmpi-bin \
libboost-all-dev
- name: info
run: |
mpicc -v
cmake --version
- uses: actions/checkout@v3
with:
repository: kokkos/kokkos
ref: 3.7.00
path: kokkos
- name: compile and install kokkos
working-directory: kokkos
run: |
mkdir build
cd build
cmake -D BUILD_SHARED_LIBS=ON \
-D CMAKE_CXX_COMPILER=clang++ \
-D CMAKE_INSTALL_PREFIX=${GITHUB_WORKSPACE}/../kokkos-install \
-D Kokkos_ENABLE_CUDA=ON \
-D Kokkos_ARCH_VOLTA70=ON \
..
make install
- name: configure deal.II
run: |
mkdir build
cd build
cmake -D CMAKE_BUILD_TYPE=Debug \
-D CMAKE_CXX_COMPILER=clang++ \
-D DEAL_II_FORCE_BUNDLED_BOOST=ON \
-D DEAL_II_CXX_FLAGS="-std=c++17" \
-D DEAL_II_EARLY_DEPRECATIONS=ON \
-D DEAL_II_WITH_CUDA="ON" \
-D DEAL_II_WITH_KOKKOS="ON" \
-D KOKKOS_DIR=${GITHUB_WORKSPACE}/../kokkos-install \
-D DEAL_II_WITH_MPI="ON" \
-D DEAL_II_MPI_WITH_DEVICE_SUPPORT="OFF" \
-D DEAL_II_WITH_P4EST="ON" \
-D DEAL_II_COMPONENT_EXAMPLES="ON" \
..
cat detailed.log
- name: archive detailed.log
uses: actions/upload-artifact@v3
with:
name: linux-cuda-clang-detailed.log
path: build/detailed.log
- name: build deal.II
run: |
cd build
make VERBOSE=1 -j 2
- name: build CUDA tests
run: |
cd build
make -j 2 setup_tests_cuda
cd tests/cuda
make -j2 compile_test_executables
linux-debug-intel-oneapi:
# parallel debug build with Intel oneAPI including MPI and MKL
#
# Based on https://github.com/oneapi-src/oneapi-ci
# For a list of Intel packages see https://oneapi-src.github.io/oneapi-ci/#linux-apt
name: linux debug intel oneapi
runs-on: [ubuntu-20.04]
steps:
- uses: actions/checkout@v3
- name: setup apt repo
run: |
# oneapi-ci/scripts/setup_apt_repo_linux.sh
wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS-2023.PUB
sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS-2023.PUB
echo "deb https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list
sudo apt-get update -o Dir::Etc::sourcelist="sources.list.d/oneAPI.list" -o APT::Get::List-Cleanup="0"
- name: collect versioned dependencies of apt packages
run : |
# oneapi-ci/scripts/apt_depends.sh
apt-cache depends intel-oneapi-compiler-dpcpp-cpp \
intel-oneapi-mpi-devel \
intel-oneapi-mkl-devel \
intel-oneapi-tbb-devel | tee dependencies.txt
- name: cache install
id: cache-install
uses: actions/cache@v3
with:
path: /opt/intel/oneapi
key: install-${{ hashFiles('**/dependencies.txt') }}
- name: install
if: steps.cache-install.outputs.cache-hit != 'true'
run: |
# oneapi-ci/scripts/install_linux_apt.sh
sudo apt-get install -y intel-oneapi-compiler-dpcpp-cpp \
intel-oneapi-mpi-devel \
intel-oneapi-mkl-devel \
intel-oneapi-tbb-devel
sudo apt-get clean
- name: info
run: |
source /opt/intel/oneapi/setvars.sh
export I_MPI_CXX=icpx
mpiicpc -v
cmake --version
- name: configure deal.II
run: |
source /opt/intel/oneapi/setvars.sh
mkdir build
cd build
cmake -D CMAKE_BUILD_TYPE=Debug \
-D CMAKE_CXX_COMPILER=icpx \
-D DEAL_II_CXX_FLAGS='-Werror -Wno-error=tautological-constant-compare' \
-D DEAL_II_EARLY_DEPRECATIONS=ON \
-D DEAL_II_WITH_MPI=ON \
-D DEAL_II_WITH_LAPACK=ON \
-D DEAL_II_WITH_TBB=ON \
-D MPI_DIR=${I_MPI_ROOT} \
-D BLAS_DIR=${MKLROOT} \
-D LAPACK_DIR=${MKLROOT} \
-D TBB_DIR=${TBBROOT} \
..
- name: print detailed.log
run: cat build/detailed.log
- name: build
run: |
source /opt/intel/oneapi/setvars.sh
cd build
make VERBOSE=1 -j2
- name: quicktest
run: |
source /opt/intel/oneapi/setvars.sh
cd build
make test