Code

Add Medication and Allergy CDA fields#51

Code

Merged

jenniferjiangkells merged 47 commits intomaindotimplement/HealthChain:mainfrom improvement/cda_fieldsdotimplement/HealthChain:improvement/cda_fieldsCopy head branch name to clipboardAug 5, 2024

+3,530-128

Commits

Commits on Jun 18, 2024

• Added data models for clindoc use cases

  

  jennferjiangkells

  committed
  b877c70

  Copy full SHA for b877c70

• Update dependencies

  jenniferjiangkells

  committed
  12cfb27

  Copy full SHA for 12cfb27

• clindoc WIP

  jenniferjiangkells

  committed
  807387d

  Copy full SHA for 807387d

Commits on Jun 20, 2024

• Renamed notereader specific models to generic ccd data

  jenniferjiangkells

  committed
  7660be4

  Copy full SHA for 7660be4

• Rename noterader specific workflow to general sign-note

  jenniferjiangkells

  committed
  fb6c57c

  Copy full SHA for fb6c57c

• Added handling of different SOAP protocol and basic clindoc strategy with leading underscore name change to internal funcs

  jenniferjiangkells

  committed
  29508c1

  Copy full SHA for 29508c1

• Modified tests

  jenniferjiangkells

  committed
  10cac22

  Copy full SHA for 10cac22

• Added SOAP submodule and templates

  jenniferjiangkells

  committed
  a305f89

  Copy full SHA for a305f89

• Merge branch 'main' into feature/clindoc-usecase

  jenniferjiangkells

  committed
  6aa4e03

  Copy full SHA for 6aa4e03

Commits on Jun 21, 2024

• Added model dump and class methods to cda models

  jenniferjiangkells

  committed
  299b8b0

  Copy full SHA for 299b8b0

• Handle soap requests in ehrclient

  jenniferjiangkells

  committed
  a4ff947

  Copy full SHA for a4ff947

• Added method to construct request from soap template and cda xml

  jenniferjiangkells

  committed
  7e53975

  Copy full SHA for 7e53975

• Added xmltodict and cda parsing utils

  jenniferjiangkells

  committed
  7a04a67

  Copy full SHA for 7a04a67

• Added minimal working SOAP/WSGI server

  jenniferjiangkells

  committed
  2a04bed

  Copy full SHA for 2a04bed

• Added save methods for xml

  jenniferjiangkells

  committed
  71b3b85

  Copy full SHA for 71b3b85

• Added example cda

  jenniferjiangkells

  committed
  ddaae49

  Copy full SHA for ddaae49

Commits on Jun 24, 2024

• Comments

  jenniferjiangkells

  committed
  a45b3ca

  Copy full SHA for a45b3ca

• Cda parser wip

  jenniferjiangkells

  committed
  32d9ce7

  Copy full SHA for 32d9ce7

Commits on Jun 27, 2024

• Added basic functionality to parse problems in cda

  jenniferjiangkells

  committed
  8c51b06

  Copy full SHA for 8c51b06

• Added export method

  jenniferjiangkells

  committed
  7bae5b2

  Copy full SHA for 7bae5b2

Commits on Jun 28, 2024

• renamed parser -> CdaAnnotator and fixed some bugs

  jenniferjiangkells

  committed
  3f6e5d1

  Copy full SHA for 3f6e5d1

• Use Concept datatypes in ccddata and added key search error handling in cda request/response models

  jenniferjiangkells

  committed
  671e3bb

  Copy full SHA for 671e3bb

• Implemented body of clindoc function

  jenniferjiangkells

  committed
  8d011a0

  Copy full SHA for 8d011a0

• Refactor cda util functions to utils module

  jenniferjiangkells

  committed
  93c15b8

  Copy full SHA for 93c15b8

Commits on Jun 30, 2024

• Merge branch 'main' into feature/clindoc-usecase

  jenniferjiangkells

  committed
  4f64a64

  Copy full SHA for 4f64a64

Commits on Jul 2, 2024

• Add base attributes to BaseUseCase and refactor apimethod

  jenniferjiangkells

  committed
  8442c12

  Copy full SHA for 8442c12

• Added fault handling to soap server

  jenniferjiangkells

  committed
  99885cd

  Copy full SHA for 99885cd

Commits on Jul 11, 2024

• Added docstring and error handling in use case funcs

  jenniferjiangkells

  committed
  d76cd8d

  Copy full SHA for d76cd8d

• Added tests

  jenniferjiangkells

  committed
  e96e840

  Copy full SHA for e96e840

Commits on Jul 12, 2024

• Added docstrings and error handling

  jenniferjiangkells

  committed
  1b7f295

  Copy full SHA for 1b7f295

• Added tests for server

  jenniferjiangkells

  committed
  da0aa7c

  Copy full SHA for da0aa7c

• Use pkgutil instead of resourcelib for backwards compatibility with 3.8 and 3.9

  jenniferjiangkells

  committed
  476bb7f

  Copy full SHA for 476bb7f

• Docstring fix

  jenniferjiangkells

  committed
  a19f464

  Copy full SHA for a19f464

• Update example use

  jenniferjiangkells

  committed
  4f9b29c

  Copy full SHA for 4f9b29c

• Update documentation

  jenniferjiangkells

  committed
  542a5b8

  Copy full SHA for 542a5b8

• Update dependencies

  jenniferjiangkells

  committed
  ce5d2b3

  Copy full SHA for ce5d2b3

Commits on Jul 22, 2024

• Add medication and allergy extractors

  adamkells

  committed
  947a908

  Copy full SHA for 947a908

Commits on Jul 23, 2024

• finishing medication and allergies

  adamkells

  committed
  27f8342

  Copy full SHA for 27f8342

Commits on Jul 25, 2024

• Merge branch 'main' into improvement/cda_fields

  adamkells

  committed
  4f793d0

  Copy full SHA for 4f793d0

Commits on Jul 29, 2024

• Added validation and add_to method for medications

  jenniferjiangkells

  committed
  202c99a

  Copy full SHA for 202c99a

Commits on Jul 30, 2024

• added allergies to cda

  adamkells

  committed
  d806fc2

  Copy full SHA for d806fc2

Commits on Aug 2, 2024

• Tweaked allergy parsing and refactored meds parsing function

  jenniferjiangkells

  committed
  d90d9dc

  Copy full SHA for d90d9dc

• Fixed tuple typing error in 3.8

  jenniferjiangkells

  committed
  e220565

  Copy full SHA for e220565

Commits on Aug 4, 2024

• Added more test conditions for allergy entries

  jenniferjiangkells

  committed
  103e49d

  Copy full SHA for 103e49d

Commits on Aug 5, 2024

• Bug fixes, logging, and added meds and allergies to clindoc use case function body

  jenniferjiangkells

  committed
  8caa021

  Copy full SHA for 8caa021

• Updated tests

  jenniferjiangkells

  committed
  4856251

  Copy full SHA for 4856251

• Update example use and added more example cda

  jenniferjiangkells

  committed
  1214d6f

  Copy full SHA for 1214d6f