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Updated SW cloud optics data, finalization routines for RRTMGP, overh…
…auled CI (#204) Spectral ordering of SW cloud optics data is corrected leading to differences in fluxes as large as a few W/m2. New inquiry and finalization routines are added for ty_gas_optics_rrtmgp. Continuous integration is overhauled to be more compact and lightweight by @skosukhin. Co-authored-by: Sergey Kosukhin <[email protected]>
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,150 +1,111 @@ | ||
| name: Continuous Integration | ||
| on: | ||
| push: | ||
| branches-ignore: | ||
| - documentation | ||
| pull_request: | ||
| branches-ignore: | ||
| - documentation | ||
| on: | ||
| push: | ||
| branches-ignore: | ||
| - documentation | ||
| pull_request: | ||
| branches-ignore: | ||
| - documentation | ||
|
|
||
| defaults: | ||
| run: | ||
| # Enable Conda environment by using the login shell: | ||
| shell: bash -leo pipefail {0} | ||
|
|
||
| jobs: | ||
| CI: | ||
| runs-on: ubuntu-20.04 | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| runs-on: ubuntu-22.04 | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| fortran-compiler: [gfortran-9, gfortran-10] | ||
| fortran-compiler: [gfortran-10, gfortran-11, gfortran-12] | ||
| rte-kernels: [default, openacc] | ||
| env: | ||
| # Core variables: | ||
| FC: ${{ matrix.fortran-compiler }} | ||
| FCFLAGS: "-ffree-line-length-none -m64 -std=f2008 -march=native -fbounds-check -finit-real=nan -g -DRTE_USE_CBOOL" | ||
| CC: gcc | ||
| NCHOME: /home/runner/netcdf-c | ||
| NFHOME: /home/runner/netcdf-fortran | ||
| RFMIP_DIR: /home/runner/rfmip-files | ||
| # Make variables: | ||
| NCHOME: /dummy | ||
| NFHOME: /usr | ||
| RRTMGP_ROOT: ${{ github.workspace }} | ||
| RTE_KERNELS: ${{ matrix.rte-kernels }} | ||
| RUN_CMD: | ||
| # Auxiliary variables: | ||
| RFMIP_CACHEDIR: /home/runner/rfmip-files | ||
| steps: | ||
| - name: Update system packages | ||
| run: sudo apt-get update | ||
| ############################################################################ | ||
| # | ||
| # Compilers.... | ||
| # Checks-out repository under $GITHUB_WORKSPACE | ||
| # | ||
| # Gfortran 10 not available in Github CI stack, so install | ||
| - uses: actions/checkout@v3 | ||
| # | ||
| - name: gfortran-10 setup compiler | ||
| if: contains(matrix.fortran-compiler, 'gfortran-10') | ||
| run: | | ||
| sudo apt-get install gfortran-10 gcc-10 | ||
| echo "CC=gcc-10" >> $GITHUB_ENV | ||
| ############################################################################ | ||
| # Synchronize the package index | ||
| # | ||
| # Netcdf C and Fortran | ||
| - name: Synchronize the package index | ||
| run: sudo apt-get update | ||
| # | ||
| - name: Install HDF5 library | ||
| run: | | ||
| sudo apt-get install libhdf5-dev libcurl4-gnutls-dev hdf5-helpers | ||
| dpkg -L libhdf5-dev | ||
| # Skipping this for now - netCDF configure doesn't see the HDF libararies | ||
| - name: cache-netcdf-c | ||
| id: cache-netcdf-c | ||
| uses: actions/cache@v3 | ||
| with: | ||
| path: /home/runner/netcdf-c | ||
| key: netcdf-c-4.7.4a-${{ runner.os }}-${{ matrix.fortran-compiler }} | ||
|
|
||
| - name: Install netcdf C library from source | ||
| if: steps.cache-netcdf-c.outputs.cache-hit != 'true' | ||
| env: | ||
| CPPFLAGS: -I/usr/include/hdf5/serial | ||
| LDFLAGS: -L/usr/lib/x86_64-linux-gnu/hdf5/serial/ | ||
| run: | | ||
| ${CC} --version | ||
| git clone https://github.com/Unidata/netcdf-c.git --branch v4.7.4 | ||
| cd netcdf-c | ||
| ls /usr/include | ||
| ./configure --prefix=${NCHOME} | ||
| make -j | ||
| sudo make install | ||
| # Would be great to encode version info | ||
| - name: cache-netcdf-fortran | ||
| id: cache-netcdf-fortran | ||
| # Install NetCDF-Fortran (compatible with all compilers) | ||
| # | ||
| - name: Install NetCDF-Fortran | ||
| run: sudo apt-get install libnetcdff-dev | ||
| # | ||
| # Cache Conda packages | ||
| # | ||
| - name: Cache Conda packages | ||
| uses: actions/cache@v3 | ||
| with: | ||
| path: /home/runner/netcdf-fortran | ||
| key: netcdf-fortran-4.5.3-${{ runner.os }}-${{ matrix.fortran-compiler }} | ||
|
|
||
| - name: Build NetCDF Fortran library | ||
| # Here too it would be nice to use the environment to specify netcdf-c location | ||
| env: | ||
| CPPFLAGS: -I/home/runner/netcdf-c/include | ||
| LDFLAGS: -L/home/runner/netcdf-c/lib | ||
| LD_LIBRARY_PATH: /home/runner/netcdf-c/lib | ||
| FCFLAGS: -fPIC | ||
| if: steps.cache-netcdf-fortran.outputs.cache-hit != 'true' | ||
| run: | | ||
| echo ${TEST} | ||
| ${FC} --version | ||
| git clone https://github.com/Unidata/netcdf-fortran.git --branch v4.5.3 | ||
| cd netcdf-fortran | ||
| echo ${CPPFLAGS} | ||
| ./configure --prefix=${NFHOME} | ||
| make -j | ||
| sudo make install | ||
| ############################################################################ | ||
| # Checks out repository under $GITHUB_WORKSPACE | ||
| - name: Check out code | ||
| uses: actions/checkout@v3 | ||
|
|
||
| - name: Environmental variables | ||
| run: echo "RRTMGP_ROOT=${GITHUB_WORKSPACE}" >> $GITHUB_ENV | ||
|
|
||
| - name: Make library, examples, tests | ||
| env: | ||
| RTE_KERNELS: ${{ matrix.rte-kernels }} | ||
| run: | | ||
| cd ${RRTMGP_ROOT} | ||
| ${FC} --version | ||
| make libs | ||
| make -C build separate-libs | ||
| ############################################################################ | ||
| # Set up Python and packages | ||
| path: ~/conda_pkgs_dir | ||
| key: conda-pkgs | ||
| # | ||
| # Set up Conda | ||
| # | ||
| - name: Setup conda | ||
| - name: Set up Conda | ||
| uses: conda-incubator/setup-miniconda@v2 | ||
| with: | ||
| miniforge-version: latest | ||
| activate-environment: rte_rrtmgp_test | ||
| environment-file: environment.yml | ||
| environment-file: environment-noplots.yml | ||
| python-version: 3.9 | ||
| auto-activate-base: false | ||
| ############################################################################ | ||
| # Use the cache properly: | ||
| use-only-tar-bz2: true | ||
| # | ||
| # Cache RFMIP files | ||
| # | ||
| - name: Cache RFMIP files | ||
| id: cache-rfmip-files | ||
| uses: actions/cache@v3 | ||
| with: | ||
| path: /home/runner/rfmip-files # Same as #{RFMIP_DIR} | ||
| path: ${{ env.RFMIP_CACHEDIR }} | ||
| key: rfmip-files | ||
|
|
||
| # | ||
| # Stage RFMIP files | ||
| # | ||
| - name: Stage RFMIP files | ||
| if: steps.cache-rfmip-files.outputs.cache-hit != 'true' | ||
| run: | | ||
| mkdir -p ${RFMIP_DIR} | ||
| cd ${RFMIP_DIR} | ||
| python ${RRTMGP_ROOT}/examples/rfmip-clear-sky/stage_files.py | ||
| ############################################################################ | ||
| # Would be great to encode version info | ||
| - name: Run examples, tests | ||
| env: | ||
| LD_LIBRARY_PATH: /home/runner/netcdf-c/lib | ||
| run: | | ||
| export LD_LIBRARY_PATH=${NFHOME}/lib:${LD_LIBRARY_PATH} | ||
| make tests | ||
| - name: Comparison | ||
| if test ! -d "${RFMIP_CACHEDIR}"; then | ||
| mkdir -p "${RFMIP_CACHEDIR}" && cd "${RFMIP_CACHEDIR}" | ||
| python "${GITHUB_WORKSPACE}/examples/rfmip-clear-sky/stage_files.py" | ||
| fi | ||
| for file in "${RFMIP_CACHEDIR}"/*; do | ||
| if test ! -d "${file}"; then | ||
| echo "copying '${file}'..." | ||
| cp "${file}" "${GITHUB_WORKSPACE}/examples/rfmip-clear-sky/" | ||
| fi | ||
| done | ||
| # | ||
| # Build libraries, examples and tests | ||
| # | ||
| - name: Build libraries, examples and tests | ||
| run: | | ||
| make check | ||
| $FC --version | ||
| make libs | ||
| make -C build separate-libs | ||
| # | ||
| # Run examples and tests | ||
| # | ||
| - name: Run examples and tests | ||
| run: make tests | ||
| # | ||
| # Compare the results | ||
| # | ||
| - name: Compare the results | ||
| run: make check |
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