{data}[foss/2024a] GDAL v3.10.0 #21907

branfosj · 2024-11-24T16:01:25Z

(created using eb --new-pr)

{data,numlib}[foss/2024a] Armadillo v14.0.3, arpack-ng v3.9.1 #21608

github-actions · 2024-11-24T16:02:05Z

Updated software `GDAL-3.10.0-foss-2024a.eb`

Diff against GDAL-3.9.0-foss-2023b.eb

easybuild/easyconfigs/g/GDAL/GDAL-3.9.0-foss-2023b.eb

diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-3.9.0-foss-2023b.eb b/easybuild/easyconfigs/g/GDAL/GDAL-3.10.0-foss-2024a.eb
index 2129945751..c84c253b59 100644
--- a/easybuild/easyconfigs/g/GDAL/GDAL-3.9.0-foss-2023b.eb
+++ b/easybuild/easyconfigs/g/GDAL/GDAL-3.10.0-foss-2024a.eb
@@ -1,7 +1,7 @@
 easyblock = 'CMakeMake'
 
 name = 'GDAL'
-version = '3.9.0'
+version = '3.10.0'
 
 homepage = 'https://www.gdal.org'
 description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style
@@ -9,54 +9,54 @@ description = """GDAL is a translator library for raster geospatial data formats
  to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for
  data translation and processing."""
 
-toolchain = {'name': 'foss', 'version': '2023b'}
+toolchain = {'name': 'foss', 'version': '2024a'}
 toolchainopts = {'usempi': True}
 
 source_urls = ['https://download.osgeo.org/%(namelower)s/%(version)s/']
 sources = [SOURCELOWER_TAR_XZ]
 patches = ['%(name)s-3.6.2_fix-python-CC-CXX.patch']
 checksums = [
-    {'gdal-3.9.0.tar.xz': '577f80e9d14ff7c90b6bfbc34201652b4546700c01543efb4f4c3050e0b3fda2'},
+    {'gdal-3.10.0.tar.xz': 'af821a3bcf68cf085724c21c9b53605fd451d83af3c8854d8bf194638eb734a8'},
     {'GDAL-3.6.2_fix-python-CC-CXX.patch': '859b874b0c8ff7626a76d51f008bf05b7f89a35b325bdd1d126d2364154acc63'},
 ]
 
 builddependencies = [
-    ('CMake', '3.27.6'),
-    ('pkgconf', '2.0.3'),
+    ('CMake', '3.29.3'),
+    ('pkgconf', '2.2.0'),
     ('Bison', '3.8.2'),
 ]
 dependencies = [
-    ('Python', '3.11.5'),
+    ('Python', '3.12.3'),
     ('netCDF', '4.9.2'),
-    ('expat', '2.5.0'),
-    ('GEOS', '3.12.1'),
-    ('SQLite', '3.43.1'),
-    ('libarchive', '3.7.2'),
-    ('libxml2', '2.11.5'),
-    ('libpng', '1.6.40'),
+    ('expat', '2.6.2'),
+    ('GEOS', '3.12.2'),
+    ('SQLite', '3.45.3'),
+    ('libarchive', '3.7.4'),
+    ('libxml2', '2.12.7'),
+    ('libpng', '1.6.43'),
     ('libjpeg-turbo', '3.0.1'),
     ('LibTIFF', '4.6.0'),
-    ('zlib', '1.2.13'),
-    ('cURL', '8.3.0'),
+    ('zlib', '1.3.1'),
+    ('cURL', '8.7.1'),
     ('PCRE', '8.45'),
-    ('PROJ', '9.3.1'),
+    ('PROJ', '9.4.1'),
     ('libgeotiff', '1.7.3'),
-    ('SciPy-bundle', '2023.11'),
-    ('HDF5', '1.14.3'),
-    ('HDF', '4.2.16-2'),
-    ('Armadillo', '12.8.0'),
-    ('CFITSIO', '4.3.1'),
-    ('zstd', '1.5.5'),
+    ('SciPy-bundle', '2024.05'),
+    ('HDF5', '1.14.5'),
+    ('HDF', '4.3.0'),
+    ('Armadillo', '14.0.3'),
+    ('CFITSIO', '4.4.1'),
+    ('zstd', '1.5.6'),
     ('giflib', '5.2.1'),
     ('json-c', '0.17'),
     ('Xerces-C++', '3.2.5'),
-    ('PCRE2', '10.42'),
-    ('OpenEXR', '3.2.0'),
+    ('PCRE2', '10.43'),
+    ('OpenEXR', '3.2.4'),
     ('Brunsli', '0.1'),
     ('Qhull', '2020.2'),
     ('LERC', '4.0.0'),
-    ('OpenJPEG', '2.5.0'),
-    ('SWIG', '4.1.1'),
+    ('OpenJPEG', '2.5.2'),
+    ('SWIG', '4.2.1'),
 ]
 
 # iterative build for both static and shared libraries

Diff against GDAL-3.7.1-foss-2023a.eb

easybuild/easyconfigs/g/GDAL/GDAL-3.7.1-foss-2023a.eb

diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-3.7.1-foss-2023a.eb b/easybuild/easyconfigs/g/GDAL/GDAL-3.10.0-foss-2024a.eb
index 88e35cd4db..c84c253b59 100644
--- a/easybuild/easyconfigs/g/GDAL/GDAL-3.7.1-foss-2023a.eb
+++ b/easybuild/easyconfigs/g/GDAL/GDAL-3.10.0-foss-2024a.eb
@@ -1,7 +1,7 @@
 easyblock = 'CMakeMake'
 
 name = 'GDAL'
-version = '3.7.1'
+version = '3.10.0'
 
 homepage = 'https://www.gdal.org'
 description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style
@@ -9,55 +9,54 @@ description = """GDAL is a translator library for raster geospatial data formats
  to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for
  data translation and processing."""
 
-toolchain = {'name': 'foss', 'version': '2023a'}
+toolchain = {'name': 'foss', 'version': '2024a'}
 toolchainopts = {'usempi': True}
 
 source_urls = ['https://download.osgeo.org/%(namelower)s/%(version)s/']
 sources = [SOURCELOWER_TAR_XZ]
 patches = ['%(name)s-3.6.2_fix-python-CC-CXX.patch']
-
 checksums = [
-    {'gdal-3.7.1.tar.xz': '9297948f0a8ba9e6369cd50e87c7e2442eda95336b94d2b92ef1829d260b9a06'},
+    {'gdal-3.10.0.tar.xz': 'af821a3bcf68cf085724c21c9b53605fd451d83af3c8854d8bf194638eb734a8'},
     {'GDAL-3.6.2_fix-python-CC-CXX.patch': '859b874b0c8ff7626a76d51f008bf05b7f89a35b325bdd1d126d2364154acc63'},
 ]
 
 builddependencies = [
-    ('CMake', '3.26.3'),
-    ('pkgconf', '1.9.5'),
+    ('CMake', '3.29.3'),
+    ('pkgconf', '2.2.0'),
     ('Bison', '3.8.2'),
 ]
 dependencies = [
-    ('Python', '3.11.3'),
+    ('Python', '3.12.3'),
     ('netCDF', '4.9.2'),
-    ('expat', '2.5.0'),
-    ('GEOS', '3.12.0'),
-    ('SQLite', '3.42.0'),
-    ('libarchive', '3.6.2'),
-    ('libxml2', '2.11.4'),
-    ('libpng', '1.6.39'),
-    ('libjpeg-turbo', '2.1.5.1'),
-    ('LibTIFF', '4.5.0'),
-    ('zlib', '1.2.13'),
-    ('cURL', '8.0.1'),
+    ('expat', '2.6.2'),
+    ('GEOS', '3.12.2'),
+    ('SQLite', '3.45.3'),
+    ('libarchive', '3.7.4'),
+    ('libxml2', '2.12.7'),
+    ('libpng', '1.6.43'),
+    ('libjpeg-turbo', '3.0.1'),
+    ('LibTIFF', '4.6.0'),
+    ('zlib', '1.3.1'),
+    ('cURL', '8.7.1'),
     ('PCRE', '8.45'),
-    ('PROJ', '9.2.0'),
-    ('libgeotiff', '1.7.1'),
-    ('SciPy-bundle', '2023.07'),
-    ('HDF5', '1.14.0'),
-    ('HDF', '4.2.16-2'),
-    ('Armadillo', '12.6.2'),
-    ('CFITSIO', '4.3.0'),
-    ('zstd', '1.5.5'),
+    ('PROJ', '9.4.1'),
+    ('libgeotiff', '1.7.3'),
+    ('SciPy-bundle', '2024.05'),
+    ('HDF5', '1.14.5'),
+    ('HDF', '4.3.0'),
+    ('Armadillo', '14.0.3'),
+    ('CFITSIO', '4.4.1'),
+    ('zstd', '1.5.6'),
     ('giflib', '5.2.1'),
-    ('json-c', '0.16'),
-    ('Xerces-C++', '3.2.4'),
-    ('PCRE2', '10.42'),
-    ('OpenEXR', '3.1.7'),
+    ('json-c', '0.17'),
+    ('Xerces-C++', '3.2.5'),
+    ('PCRE2', '10.43'),
+    ('OpenEXR', '3.2.4'),
     ('Brunsli', '0.1'),
     ('Qhull', '2020.2'),
     ('LERC', '4.0.0'),
-    ('OpenJPEG', '2.5.0'),
-    ('SWIG', '4.1.1'),
+    ('OpenJPEG', '2.5.2'),
+    ('SWIG', '4.2.1'),
 ]
 
 # iterative build for both static and shared libraries

Diff against GDAL-3.6.2-foss-2022b.eb

easybuild/easyconfigs/g/GDAL/GDAL-3.6.2-foss-2022b.eb

diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-3.6.2-foss-2022b.eb b/easybuild/easyconfigs/g/GDAL/GDAL-3.10.0-foss-2024a.eb
index 576d90e74d..c84c253b59 100644
--- a/easybuild/easyconfigs/g/GDAL/GDAL-3.6.2-foss-2022b.eb
+++ b/easybuild/easyconfigs/g/GDAL/GDAL-3.10.0-foss-2024a.eb
@@ -1,7 +1,7 @@
 easyblock = 'CMakeMake'
 
 name = 'GDAL'
-version = '3.6.2'
+version = '3.10.0'
 
 homepage = 'https://www.gdal.org'
 description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style
@@ -9,73 +9,73 @@ description = """GDAL is a translator library for raster geospatial data formats
  to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for
  data translation and processing."""
 
-toolchain = {'name': 'foss', 'version': '2022b'}
+toolchain = {'name': 'foss', 'version': '2024a'}
 toolchainopts = {'usempi': True}
 
-source_urls = ['https://download.osgeo.org/gdal/%(version)s/']
+source_urls = ['https://download.osgeo.org/%(namelower)s/%(version)s/']
 sources = [SOURCELOWER_TAR_XZ]
-patches = ['GDAL-3.6.2_fix-python-CC-CXX.patch']
+patches = ['%(name)s-3.6.2_fix-python-CC-CXX.patch']
 checksums = [
-    {'gdal-3.6.2.tar.xz': '35f40d2e08061b342513cdcddc2b997b3814ef8254514f0ef1e8bc7aa56cf681'},
+    {'gdal-3.10.0.tar.xz': 'af821a3bcf68cf085724c21c9b53605fd451d83af3c8854d8bf194638eb734a8'},
     {'GDAL-3.6.2_fix-python-CC-CXX.patch': '859b874b0c8ff7626a76d51f008bf05b7f89a35b325bdd1d126d2364154acc63'},
 ]
 
 builddependencies = [
-    ('CMake', '3.24.3'),
-    ('pkgconf', '1.9.3'),
+    ('CMake', '3.29.3'),
+    ('pkgconf', '2.2.0'),
     ('Bison', '3.8.2'),
 ]
-
 dependencies = [
-    ('Python', '3.10.8'),
-    ('netCDF', '4.9.0'),
-    ('expat', '2.4.9'),
-    ('GEOS', '3.11.1'),
-    ('SQLite', '3.39.4'),
-    ('libxml2', '2.10.3'),
-    ('libpng', '1.6.38'),
-    ('libjpeg-turbo', '2.1.4'),
-    ('LibTIFF', '4.4.0'),
-    ('zlib', '1.2.12'),
-    ('cURL', '7.86.0'),
+    ('Python', '3.12.3'),
+    ('netCDF', '4.9.2'),
+    ('expat', '2.6.2'),
+    ('GEOS', '3.12.2'),
+    ('SQLite', '3.45.3'),
+    ('libarchive', '3.7.4'),
+    ('libxml2', '2.12.7'),
+    ('libpng', '1.6.43'),
+    ('libjpeg-turbo', '3.0.1'),
+    ('LibTIFF', '4.6.0'),
+    ('zlib', '1.3.1'),
+    ('cURL', '8.7.1'),
     ('PCRE', '8.45'),
-    ('PROJ', '9.1.1'),
-    ('libgeotiff', '1.7.1'),
-    ('SciPy-bundle', '2023.02'),
-    ('HDF5', '1.14.0'),
-    ('HDF', '4.2.15'),
-    ('Armadillo', '11.4.3'),
-    ('CFITSIO', '4.2.0'),
-    ('zstd', '1.5.2'),
+    ('PROJ', '9.4.1'),
+    ('libgeotiff', '1.7.3'),
+    ('SciPy-bundle', '2024.05'),
+    ('HDF5', '1.14.5'),
+    ('HDF', '4.3.0'),
+    ('Armadillo', '14.0.3'),
+    ('CFITSIO', '4.4.1'),
+    ('zstd', '1.5.6'),
     ('giflib', '5.2.1'),
-    ('json-c', '0.16'),
-    ('Xerces-C++', '3.2.4'),
-    ('PCRE2', '10.40'),
-    ('OpenEXR', '3.1.5'),
+    ('json-c', '0.17'),
+    ('Xerces-C++', '3.2.5'),
+    ('PCRE2', '10.43'),
+    ('OpenEXR', '3.2.4'),
     ('Brunsli', '0.1'),
     ('Qhull', '2020.2'),
     ('LERC', '4.0.0'),
-    ('OpenJPEG', '2.5.0'),
+    ('OpenJPEG', '2.5.2'),
+    ('SWIG', '4.2.1'),
 ]
 
-# common configopts for static, shared library builds
-_base_configopts = ' '.join([
-    '-DGDAL_USE_INTERNAL_LIBS=OFF',
-    '-DGEOTIFF_INCLUDE_DIR=$EBROOTLIBGEOTIFF/include',
-    '-DPython_ROOT=$EBROOTPYTHON',
-    '-DGDAL_USE_MYSQL=OFF',
-])
-
 # iterative build for both static and shared libraries
-configopts = [' '.join([_base_configopts, x]) for x in ['-DBUILD_SHARED_LIBS=OFF', '']]
+local_configopts_common = "-DGDAL_USE_INTERNAL_LIBS=OFF -DGDAL_USE_MYSQL=OFF "
+local_configopts_common += "-DGEOTIFF_INCLUDE_DIR=$EBROOTLIBGEOTIFF/include -DPython_ROOT=$EBROOTPYTHON "
+
+configopts = [
+    local_configopts_common + "-DBUILD_SHARED_LIBS=OFF",
+    local_configopts_common
+]
 
-modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'}
 
 sanity_check_paths = {
     'files': ['lib/libgdal.a', 'lib/libgdal.%s' % SHLIB_EXT],
-    'dirs': ['bin', 'include', 'lib/python%(pyshortver)s/site-packages']
+    'dirs': ['bin', 'include', 'lib/python%(pyshortver)s/site-packages'],
 }
 
-sanity_check_commands = ["python -c 'import osgeo.gdal'"]
+sanity_check_commands = ["python -c 'import osgeo.%(namelower)s'"]
+
+modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'}
 
 moduleclass = 'data'

branfosj · 2024-11-24T17:42:48Z

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/9f2a15f4068fc791fb077074882344ee for a full test report.

branfosj · 2024-11-24T18:23:08Z

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bear-pg0210u03a.bear.cluster - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Platinum 8480CL (sapphirerapids), Python 3.6.8
See https://gist.github.com/branfosj/176c4c87a72779f811ccfab9b0e65de2 for a full test report.

smoors · 2024-11-26T12:51:08Z

easybuild.tools.build_log.EasyBuildError: 'Missing dependencies: Armadillo/14.0.3-foss-2024a (no easyconfig file or existing module found)'

branfosj · 2024-11-26T13:33:35Z

easybuild.tools.build_log.EasyBuildError: 'Missing dependencies: Armadillo/14.0.3-foss-2024a (no easyconfig file or existing module found)'

Is in #21608 but that also has a different GDAL.

easybuild/easyconfigs/g/GDAL/GDAL-3.10.0-foss-2024a.eb

…asyconfigs into 20241124160119_new_pr_GDAL3100

branfosj · 2024-12-06T18:38:42Z

@boegelbot please test @ generoso

boegelbot · 2024-12-06T18:40:06Z

@branfosj: Request for testing this PR well received on login1

PR test command 'EB_PR=21907 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21907 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14828

Test results coming soon (I hope)...

- notification for comment with ID 2523930206 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

branfosj · 2024-12-06T18:40:41Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-12-06T18:50:10Z

@branfosj: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21907 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21907 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5408

Test results coming soon (I hope)...

- notification for comment with ID 2523933292 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-12-06T19:06:29Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.19
See https://gist.github.com/boegelbot/f1285b07321c75cc1df4fd36ee1fdb7b for a full test report.

boegelbot · 2024-12-06T19:14:03Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/c6c6704c0d888c0057f78db9e2a23488 for a full test report.

branfosj · 2024-12-06T19:26:36Z

Test report by @branfosj
SUCCESS
Build succeeded for 2 out of 2 (1 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/cbb59296664c44688598fa173932154c for a full test report.

branfosj · 2024-12-06T20:04:54Z

Test report by @branfosj
SUCCESS
Build succeeded for 2 out of 2 (1 easyconfigs in total)
bear-pg0210u03b.bear.cluster - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Platinum 8480CL (sapphirerapids), Python 3.6.8
See https://gist.github.com/branfosj/3011e60158b93dd1f514540c2a9eebdb for a full test report.

smoors

lgtm

smoors · 2024-12-07T07:21:19Z

Going in, thanks @branfosj!

adding easyconfigs: GDAL-3.10.0-foss-2024a.eb

9d4ee61

branfosj added the update label Nov 24, 2024

EB4

d78ea49

branfosj mentioned this pull request Nov 24, 2024

{lang}[foss/2024a,gfbf/2024a] R v4.4.2, R-bundle-CRAN v2024.11 #21908

Merged

3 tasks

smoors mentioned this pull request Nov 26, 2024

{data,numlib}[foss/2024a] Armadillo v14.0.3, arpack-ng v3.9.1 #21608

Merged

maxim-masterov mentioned this pull request Dec 6, 2024

{data}[foss/2024a] Fiona v1.10.1 #21614

Merged

smoors reviewed Dec 6, 2024

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easybuild/easyconfigs/g/GDAL/GDAL-3.10.0-foss-2024a.eb Outdated Show resolved Hide resolved

branfosj and others added 2 commits December 6, 2024 15:19

giflib/5.2.1

3ed0dcf

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

94ce495

…asyconfigs into 20241124160119_new_pr_GDAL3100

smoors added this to the release after 4.9.4 milestone Dec 7, 2024

smoors approved these changes Dec 7, 2024

View reviewed changes

smoors merged commit 833d990 into easybuilders:develop Dec 7, 2024
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branfosj deleted the 20241124160119_new_pr_GDAL3100 branch December 7, 2024 07:41

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{data}[foss/2024a] GDAL v3.10.0 #21907

{data}[foss/2024a] GDAL v3.10.0 #21907

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smoors commented Dec 7, 2024

{data}[foss/2024a] GDAL v3.10.0 #21907

{data}[foss/2024a] GDAL v3.10.0 #21907

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branfosj commented Nov 24, 2024 • edited Loading

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Updated software GDAL-3.10.0-foss-2024a.eb

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smoors commented Dec 7, 2024

branfosj commented Nov 24, 2024 •

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github-actions bot commented Nov 24, 2024 •

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Updated software `GDAL-3.10.0-foss-2024a.eb`