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@ebi-gene-expression-group

EBI Gene Expression Group

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  1. anatomogram anatomogram Public

    Anatomogram illustrating Expression Atlas experiments

    JavaScript 40 20

  2. scanpy-scripts scanpy-scripts Public

    Scripts for using scanpy

    Python 31 13

  3. atlas atlas Public archive

    Expression Atlas

    Java 26 5

  4. r-seurat-scripts r-seurat-scripts Public

    Scripts to install as a Bioconda package for making workflows

    R 18 4

  5. container-galaxy-sc-tertiary container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    Python 16 14

  6. scxa-workflows scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    Shell 14 2

Repositories

Showing 10 of 182 repositories
  • scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    ebi-gene-expression-group/scxa-workflows’s past year of commit activity
    Shell 14 Apache-2.0 2 5 2 Updated Nov 27, 2024
  • scxa-control-workflow Public

    Master Nextflow workflow for running each component of the SMART-seq and droplet SCXA pipelines

    ebi-gene-expression-group/scxa-control-workflow’s past year of commit activity
    R 4 2 4 1 Updated Nov 27, 2024
  • container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    ebi-gene-expression-group/container-galaxy-sc-tertiary’s past year of commit activity
    Python 16 MIT 14 26 14 Updated Nov 27, 2024
  • atlas-web-single-cell Public

    Single Cell Expression Atlas web application

    ebi-gene-expression-group/atlas-web-single-cell’s past year of commit activity
    Java 5 Apache-2.0 5 79 7 Updated Nov 27, 2024
  • atlas-release-notes Public

    Release notes for (Single Cell) Expression Atlas

    ebi-gene-expression-group/atlas-release-notes’s past year of commit activity
    Shell 0 0 1 2 Updated Nov 27, 2024
  • atlas-bulk-baseline-ot-export-wf Public

    New baseline export for Open Targets (although it is meant as a general purpose export)

    ebi-gene-expression-group/atlas-bulk-baseline-ot-export-wf’s past year of commit activity
    Python 0 0 0 0 Updated Nov 27, 2024
  • atlas-components Public

    Front end components of Expression Atlas and Single Cell Expression Atlas

    ebi-gene-expression-group/atlas-components’s past year of commit activity
    JavaScript 3 3 15 1 Updated Nov 26, 2024
  • atlas-web-bulk Public

    Bulk Expression Atlas web application

    ebi-gene-expression-group/atlas-web-bulk’s past year of commit activity
    Java 0 Apache-2.0 1 37 4 Updated Nov 26, 2024
  • index-bioentities Public

    Scripts to automate building and populating the bioentities collection

    ebi-gene-expression-group/index-bioentities’s past year of commit activity
    Shell 0 0 0 1 Updated Nov 22, 2024
  • atlas-web-core Public

    Business logic for single cell and bulk Expression Atlas and for the up-and-coming Expression Atlas API

    ebi-gene-expression-group/atlas-web-core’s past year of commit activity
    Java 0 1 4 0 Updated Nov 22, 2024
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