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@epi2me-labs

EPI2ME Labs

Bioinformatics resources from Oxford Nanopore Technologies Plc

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  1. kraken2-server kraken2-server Public

    Kraken2 Server

    C++ 21 4

  2. wf-transcriptomes wf-transcriptomes Public

    Nextflow 91 36

  3. wf-single-cell wf-single-cell Public

    Python 86 43

  4. wf-bacterial-genomes wf-bacterial-genomes Public

    Small variant calling for haploid samples

    Python 34 19

  5. wf-human-variation wf-human-variation Public

    Nextflow 118 60

  6. fastcat fastcat Public

    Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.

    C 36 4

Repositories

Showing 10 of 35 repositories
  • epi2me-labs/epi2me-labs.github.io’s past year of commit activity
    HTML 8 2 0 0 Updated Apr 16, 2025
  • epi2me-labs/wf-single-cell’s past year of commit activity
    Python 86 43 15 0 Updated Apr 16, 2025
  • wf-flu Public
    epi2me-labs/wf-flu’s past year of commit activity
    Nextflow 17 5 2 0 Updated Apr 16, 2025
  • epi2me-labs/wf-transcriptomes’s past year of commit activity
    Nextflow 91 36 16 1 Updated Apr 15, 2025
  • epi2me-labs/wf-basecalling’s past year of commit activity
    Nextflow 39 20 17 1 Updated Apr 15, 2025
  • wf-amplicon Public
    epi2me-labs/wf-amplicon’s past year of commit activity
    Python 30 9 4 0 Updated Apr 14, 2025
  • wf-16s Public
    epi2me-labs/wf-16s’s past year of commit activity
    Nextflow 29 5 3 0 Updated Apr 14, 2025
  • epi2me-labs/wf-clone-validation’s past year of commit activity
    Python 32 21 4 0 Updated Apr 14, 2025
  • wf-metagenomics Public

    Metagenomic classification of long-read sequencing data

    epi2me-labs/wf-metagenomics’s past year of commit activity
    Python 80 25 1 0 Updated Apr 11, 2025
  • wf-template Public

    Nextflow workflow template repository

    epi2me-labs/wf-template’s past year of commit activity
    Python 18 33 1 0 Updated Apr 10, 2025

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