Update text for post-Christmas

• Updated the summary text to reflect post-Christmas changes.
• Updated the time at 95% Omicron plot to include median estimates. This was needed to prevent estimates disappearing when uncertainty was less than or equal to a day.
• Fixed a bug for the centred 7-day moving average where partially complete case data was included for regions. This impacted on the data overview plot.

Full Changelog: v1.2.0...v1.3.0

Update text for post-Christmas changes

• Updated the summary text to reflect post-Christmas changes.
• Updated the time at 95% Omicron plot to include median estimates. This was needed to prevent estimates disappearing when uncertainty was less than or equal to a day.
• Fixed a bug for the centred 7-day moving average where partially complete case data was included for regions. This impacted on the data overview plot.

Full Changelog: v1.2.0...reportv1.3.0

Switch archiving to be date of access

• Updated data and results archiving to be by date of access rather than by the maximum date available in the data. This has the download of making an update occur every day the pipeline runs regardless of if the data has been updated but the upside of protecting archived data from retrospective updates.

• Updates dating of all archived data and results to be by date of access rather than by maximum available date in the data.

What's Changed

• Feature: make data updating more robust by @seabbs in #21

Full Changelog: v1.1.0...v1.2.0

Switch archiving to be date of access

• Updated data and results archiving to be by date of access rather than by the maximum date available in the data. This has the download of making an update occur every day the pipeline runs regardless of if the data has been updated but the upside of protecting archived data from retrospective updates.

• Updates dating of all archived data and results to be by date of access rather than by maximum available date in the data.

Cumulative incidence corrected

• Thanks to Ritwik Priya for spotting an issue with our cumulative incidence as a percentage of the population estimates. Unfortunately, our code accidently combined all cases types (Omicron, non-Omicron, and combined) when making the calculating leading to estimates roughly 3 times higher than they should have been.
• Update the region order of the cumulative incidence plot to match other regions.

What's Changed

• Bug: Corrects cumulative incidence by @seabbs in #20
  Full Changelog: v1.0.0...v1.1.0

Cumulative incidence corrected

• Thanks to Ritwik Priya for spotting an issue with our cumulative incidence as a percentage of the population estimates. Unfortunately, our code accidently combined all cases types (Omicron, non-Omicron, and combined) when making the calculating leading to estimates roughly 3 times higher than they should have been.
• Update the region order of the cumulative incidence plot to match other regions.

SPI-M submission

What's Changed

• Minor changes by @sbfnk in #17
• Add summary plot by @kathsherratt in #16
• Remove point estimates and automate by @seabbs in #18

New Contributors

• @sbfnk made their first contribution in #17

Full Changelog: v0.0.1...v1.0.0

Initial analysis release

What's Changed

• Server by @seabbs in #1
• Latest changes by @kathsherratt in #2
• increase figure size by @kathsherratt in #3
• Report read through by @seabbs in #4
• Feature: link estimates with plots by @seabbs in #9
• minor text check by @kathsherratt in #15
• Text + plots by @seabbs in #14

New Contributors

• @seabbs made their first contribution in #1
• @kathsherratt made their first contribution in #2

Full Changelog: https://github.com/epiforecasts/omicron-sgtf-forecast/commits/v0.0.1

SPI-M submission

Report as submitted to SPI-M with automation notes and tweaks.

Initial report release

Full Changelog: https://github.com/epiforecasts/omicron-sgtf-forecast/commits/reportv0.0.1