fix: package extensions

[Fe-r-oz]

This PR fixes the three Package Extensions namely, JuMPExt, JLD2Ext, MakieExt. The first two have been successfully compiled as well. The WGLMakie takes forever to compile, so couldn't really test MakieExt by drawing weight_plots.

As instructed, I tested the "src/Quantum/misc_known_codes_test.jl". This contains many codes that uses JLD2Ext. All the tests passed.

julia> include("misc_known_codes_test.jl")
Precompiling JLD2Ext
        Info Given JLD2Ext was explicitly requested, output will be shown live 
WARNING: could not import CodingTheory.PlanarSurfaceCode3D into JLD2Ext
WARNING: could not import CodingTheory.ToricCode3D into JLD2Ext
  1 dependency successfully precompiled in 23 seconds. 180 already precompiled.
  1 dependency had output during precompilation:
┌ CodingTheory → JLD2Ext
│  [Output was shown above]                                                                                                    
└                                                                                                                              
┌ Warning: The distance set is greater than the current upper bound of 2
└ @ CodingTheory ~/Desktop/ct/task/CodingTheory/src/Quantum/stabilizer_code.jl:556
┌ Warning: The distance set is greater than the current upper bound of 2
└ @ CodingTheory ~/Desktop/ct/task/CodingTheory/src/Quantum/stabilizer_code.jl:556
┌ Warning: The distance set is greater than the current upper bound of 2
└ @ CodingTheory ~/Desktop/ct/task/CodingTheory/src/Quantum/stabilizer_code.jl:556
Test Summary:               | Pass  Total     Time
Quantum/misc_known_codes.jl |  130    130  1m15.3s
Test.DefaultTestSet("Quantum/misc_known_codes.jl", Any[], 130, false, false, true, 1.726006162109859e9, 1.726006237412491e9, false, "/home/Transcendence/Desktop/ct/task/CodingTheory/test/Quantum/misc_known_codes_test.jl")

There was a minor bug in the ToricCode that was detected by the tests. 1 test failed. It was that set_dressed_X_minimum_distance! seems to be for subsystem codes, but since Toric code is a Stabilizer code, so we have to use set_X_minimum_distance!.

julia> include("misc_known_codes_test.jl")
┌ Warning: The distance set is greater than the current upper bound of 2
└ @ CodingTheory ~/Desktop/ct/task/CodingTheory/src/Quantum/stabilizer_code.jl:556
┌ Warning: The distance set is greater than the current upper bound of 2
└ @ CodingTheory ~/Desktop/ct/task/CodingTheory/src/Quantum/stabilizer_code.jl:556
┌ Warning: The distance set is greater than the current upper bound of 2
└ @ CodingTheory ~/Desktop/ct/task/CodingTheory/src/Quantum/stabilizer_code.jl:556
Quantum/misc_known_codes.jl: Error During Test at /home/Desktop/ct/task/CodingTheory/test/Quantum/misc_known_codes_test.jl:1
  Got exception outside of a @test
  Only valid for subsytem codes; use `set_X_minimum_distance!` for stabilizer codes.
  Stacktrace:
    [1] error(s::String)
      @ Base ./error.jl:35
    [2] set_dressed_X_minimum_distance!(::HasNoGauges, ::CodingTheory.IsCSS, S::StabilizerCodeCSS, d::Int64)
      @ CodingTheory ~/Desktop/ct/task/CodingTheory/src/Quantum/subsystem_code.jl:1303
    [3] set_dressed_X_minimum_distance!(S::StabilizerCodeCSS, d::Int64)
      @ CodingTheory ~/Desktop/ct/task/CodingTheory/src/Quantum/subsystem_code.jl:1276
    [4] ToricCode(d::Int64)
      @ CodingTheory ~/Desktop/ct/task/CodingTheory/src/Quantum/misc_known_codes.jl:1342
    [5] macro expansion
      @ ~/Desktop/ct/task/CodingTheory/test/Quantum/misc_known_codes_test.jl:258 [inlined]
    [6] macro expansion
      @ ~/.julia/juliaup/julia-1.10.4+0.x64.linux.gnu/share/julia/stdlib/v1.10/Test/src/Test.jl:1577 [inlined]
    [7] top-level scope
      @ ~/Desktop/ct/task/CodingTheory/test/Quantum/misc_known_codes_test.jl:2
    [8] include(fname::String)
      @ Base.MainInclude ./client.jl:489
    [9] top-level scope
      @ REPL[2]:1
   [10] eval
      @ ./boot.jl:385 [inlined]
   [11] eval_user_input(ast::Any, backend::REPL.REPLBackend, mod::Module)
      @ REPL ~/.julia/juliaup/julia-1.10.4+0.x64.linux.gnu/share/julia/stdlib/v1.10/REPL/src/REPL.jl:150
   [12] repl_backend_loop(backend::REPL.REPLBackend, get_module::Function)
      @ REPL ~/.julia/juliaup/julia-1.10.4+0.x64.linux.gnu/share/julia/stdlib/v1.10/REPL/src/REPL.jl:246
   [13] start_repl_backend(backend::REPL.REPLBackend, consumer::Any; get_module::Function)
      @ REPL ~/.julia/juliaup/julia-1.10.4+0.x64.linux.gnu/share/julia/stdlib/v1.10/REPL/src/REPL.jl:231
   [14] run_repl(repl::REPL.AbstractREPL, consumer::Any; backend_on_current_task::Bool, backend::Any)
      @ REPL ~/.julia/juliaup/julia-1.10.4+0.x64.linux.gnu/share/julia/stdlib/v1.10/REPL/src/REPL.jl:389
   [15] run_repl(repl::REPL.AbstractREPL, consumer::Any)
      @ REPL ~/.julia/juliaup/julia-1.10.4+0.x64.linux.gnu/share/julia/stdlib/v1.10/REPL/src/REPL.jl:375
   [16] (::Base.var"#1013#1015"{Bool, Bool, Bool})(REPL::Module)
      @ Base ./client.jl:432
   [17] #invokelatest#2
      @ ./essentials.jl:892 [inlined]
   [18] invokelatest
      @ ./essentials.jl:889 [inlined]
   [19] run_main_repl(interactive::Bool, quiet::Bool, banner::Bool, history_file::Bool, color_set::Bool)
      @ Base ./client.jl:416
   [20] exec_options(opts::Base.JLOptions)
      @ Base ./client.jl:333
   [21] _start()
      @ Base ./client.jl:552
Test Summary:               | Pass  Error  Total  Time
Quantum/misc_known_codes.jl |  118      1    119  8.6s
ERROR: LoadError: Some tests did not pass: 118 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/Transcendence/Desktop/ct/task/CodingTheory/test/Quantum/misc_known_codes_test.jl:1

This small change fixed the above mentioned error:

    set_X_minimum_distance!(S, d)
    set_Z_minimum_distance!(S, d)

[Fe-r-oz]

I am done with changes. The PR is now ready for review. Thank you!