cluster

An implementation of the UZH s3it example snakemake pipeline in nextflow.

Requesting an interactive session

srun --pty -n 1 -c 1 --time=01:00:00 --mem=4G bash -l

Creating environment from file

module mamba
mamba env create -f nextflow.yml
source activate nextflow

Terminating an interative session

Type exit or press Ctrl+D.

Submit sumbission script

sbatch run_cluster_test.slurm