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Flavell Lab

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  1. AtanasKim-Cell2023 AtanasKim-Cell2023 Public

    Jupyter Notebook 10 1

  2. CePNEMAnalysis.jl CePNEMAnalysis.jl Public

    Jupyter Notebook 2

  3. CePNEM-web CePNEM-web Public

    Website displaying CePNEM data.

    HTML 2 1

  4. pytorch-3dunet pytorch-3dunet Public

    Forked from wolny/pytorch-3dunet

    3D U-Net model for volumetric semantic segmentation written in pytorch

    Jupyter Notebook 1 2

  5. CePNEM.jl CePNEM.jl Public

    Model of neural encoding of behavior, together with `Gen.jl` tools to fit it.

    Julia 1

  6. DeepReg DeepReg Public

    Forked from DeepRegNet/DeepReg

    Medical image registration using deep learning

    Python 1 1

Repositories

Showing 10 of 50 repositories
  • SparseClustering.jl Public

    Implements a minimum-linkage hierarchical clustering algorithm for sparse distance matrices.

    flavell-lab/SparseClustering.jl’s past year of commit activity
    Julia 1 MIT 1 0 0 Updated Mar 5, 2025
  • SAAV_Decoding Public
    flavell-lab/SAAV_Decoding’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 23, 2024
  • SegmentationTools.jl Public
    flavell-lab/SegmentationTools.jl’s past year of commit activity
    Julia 0 2 2 1 Updated Nov 15, 2024
  • unet2d Public
    flavell-lab/unet2d’s past year of commit activity
    Python 0 1 0 0 Updated Nov 15, 2024
  • ExtractRegisteredData.jl Public
    flavell-lab/ExtractRegisteredData.jl’s past year of commit activity
    Julia 0 0 2 0 Updated Nov 15, 2024
  • BrainAlignNet Public

    BrainAlignNet uses deep neural network to register cells in the deforming head of freely-moving C. elegans.

    flavell-lab/BrainAlignNet’s past year of commit activity
    Jupyter Notebook 1 MIT 2 0 0 Updated Nov 12, 2024
  • AutoCellLabeler Public

    A Python package to automate NeuroPAL labeling via interfacing with a 3D-UNet.

    flavell-lab/AutoCellLabeler’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Oct 29, 2024
  • pytorch-3dunet Public Forked from wolny/pytorch-3dunet

    3D U-Net model for volumetric semantic segmentation written in pytorch

    flavell-lab/pytorch-3dunet’s past year of commit activity
    Jupyter Notebook 1 MIT 531 0 0 Updated Oct 16, 2024
  • flv-c-setup Public

    flv-c server setup script

    flavell-lab/flv-c-setup’s past year of commit activity
    Shell 0 0 1 0 Updated Sep 23, 2024
  • ImageRegistration.jl Public

    A Julia wrapper package to perform rigid-body and deepnet-based image registration.

    flavell-lab/ImageRegistration.jl’s past year of commit activity
    Julia 0 MIT 0 0 0 Updated Sep 13, 2024
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