implement a dialog for importing externally generated tracks from csv #109
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I think this is mostly stuff we discussed Monday. I updated the file structure a bit to make an import_export folder, and I didn't see any circular import issues when I ran it, but let me know if there is anything weird. I'll keep thinking about how we want to generally handle attributes in a more consistent way too.
src/motile_plugin/import_export/import_external_tracks_dialog.py
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src/motile_plugin/import_export/import_external_tracks_dialog.py
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src/motile_plugin/import_export/import_external_tracks_dialog.py
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| if segmentation is not None: | ||
| segmentation = np.expand_dims( | ||
| segmentation, axis=1 | ||
| ) # do we need to keep the empty hypothesis dim? |
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Yes, for now! Until we update to motile_toolbox v0.4.0
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Cool! Thanks for your comments! Yes we need to update it again when we get rid of the hypothesis segmentation and make the node_ids unique. I also included a basic test checking if the segmentation pixel value at node coordinates is in agreement with the provided seg_id in the csv file.
…tton in the trackslist
…uess fields and updates the name of the custom attributes when a column is selected
…_tracks instead. Update also view_external_tracks.py and documentation
…dinates does not match with the provided seg_id from the csv file, as this likely indicates that the wrong pair of files has been selected. Remove the warning about viewing tracks that are not a motile run
…nfer the datatypes
Update conda config and pyproject napari entrypoint to tracker
…eg_id was provided
…ze on empty QLineEdit
…age_path_line QLineEdit
… nodes with an empty group attribute)
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