Merge PR #2399 (Add "alldiags" integration test)

This merge brings PR #2399 (Add simulation with all diagnostics turned
to integration testing, by @msulprizio and @yantosca) into the GEOS-Chem
"no-diff-to-benchmark" development stream.

This PR adds GCHP and GCClassic integration tests (based on the
fullchem_benchmark test) with all diagnostics turned on.  Several minor
issues revealed by these tests have also been fixed.

Signed-off-by: Bob Yantosca <[email protected]>

CHANGELOG.md

@@ -5,31 +5,42 @@ This file documents all notable changes to the GEOS-Chem repository starting in
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
 ## [Unreleased] - TBD
+### Added
+- Added ModelEe.2 (GCAP 2.0) simulation to integration tests for GCClassic
+- Added simulation with all diagnostics on in HISTORY.rc to integration tests for GCClassic (including Planeflight + ObsPack) and GCHP
+- Added descriptive error message in `Interfaces/GCHP/gchp_historyexportsmod.F90`
+
 ### Fixed
 - Added brackets around `exempt-issue-labels` list in `.github/workflows/stale.yml`
 
 ## [14.4.2] - 2024-07-24
 ### Added
 - Added number of levels with clouds for photolysis to geoschem_config.yml and Input_Opt to pass to Cloud-J
 - Added `State_Grid%CPU_Subdomain_ID` and `State_Grid%CPU_Subdomain_FirstID` as "identifier numbers" for multiple instances of GEOS-Chem on one core in WRF and CESM
-- Added ModelEe.2 (GCAP 2.0) simulation to integration tests for GCClassic
 
 ### Changed
 - Now reset `State_Diag%SatDiagnCount` to zero in routine`History_Write` (instead of in `History_Netcdf_Write`)
 - Update rundir creation scripts to turn off the MEGAN extension for "standard" fullchem simulations
 - Updated emissions used in CESM to match standard emissions used in the 14.4 offline model
 - Disable support For FAST-JX for all simulations except Hg
+- Replace calls to `GEOS_CHEM_STOP` with calls to `GC_Error` in `planeflight_mod.F90`
+- Script `test/integration/GCHP/integrationTestExecute.sh` now resets `cap_restart` time to `000000`, to facilitate manual restart
 
 ### Fixed
 - Typo in `setCommonRunSettings.sh` that made GCHP always choose mass fluxes for meteorology
 - Fixed bug in # levels with cloud used in photolysis when using GCAP met or CESM
 - Fixed typos for `SatDiagnEdge` collection in `HISTORY.rc` templates
 - The `SatDiagnOH` diagnostic now works for the carbon simulation
+- Restored missing fields for `UVFlux` collection in `run/GCClassic/HISTORY.rc.templates/HISTORY.rc.fullchem`
+- Comment out `UVFlux` diagnostic in the "alldiags" integration test, there is a floating point error.  Look at this later.
+- Now use SO4 instead of O3 in the GCHP fullchem budget diagnostic (SO4 is soluble, O3 is not)
+- Convert `UVFlux_Tag_Names` to uppercase in the comparison in `Get_UVFlux_Bin`(located in`Headers/state_diag_mod.F90`)
+- Fixed typo (missing `_` character) in GCHP `DryDep` collection diagnostic entries
+- Commented out with `###` emissions diagnostics in the GCHP `HISTORY.rc.fullchem` template that are not present in the corresponding `HEMCO_DIAGN.rc` template
 
 ### Removed
 - Entry `SatDiagnPEDGE` from the `SatDiagn` collection; This needs to go into the `SatDiagnEdge` collection.
 
-
 ### Changed
 - Only read photolysis data in `Init_Photolysis` in first instance of GEOS-Chem on each PET in CESM as PIO requires it