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Parallel STAR#5

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ilia-kats wants to merge 6 commits intohawkjo:masterhawkjo/SDRranger:masterfrom ilia-kats:bamsortingCopy head branch name to clipboard

+243-112

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Commits on May 21, 2024

• implement processing of unsorted BAM files

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• improve BAM name lookup

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• implement processing of unsorted BAM files for gDNA workflow

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Commits on May 23, 2024

• make BAM lookup by name work when reads in a pair actually have different names

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Commits on May 27, 2024

• RNA external STAR: do not assume matched read order

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• add new gDNA subcommand to only preprocess FASTQs, enable running with

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