v4.1.0

• Bump phenocycler-pipeline submodule to v1.1.1
• Bugfix CODEX resource_map

v4.0.0

• New flow: creating datasets just after sucessful runs
• Bump IVT version v0.0.34
• bump ingest-validation-tests to 1.2.0

v3.13.0

• Adding permissions reset to reorganized datasets
• Bug fix: not consider Publications as a previous version
• Bump pas-ftu-segmentation-pipeline submodule to v1.2.0
• Update rebuild_multiple_metadata.py

v3.12.3

• fix: add headers=None to avoid weird numbering issues
• Bump epic-obj-csv-to-mudata submodule to v0.3.4
• fix: Change calculated_metadata
• Bug fix: data file path + update cwl_parameters to list instead of dict
• Bump IVT v0.0.33

v3.12.2

• Bug fix: Visium output_filename path is container relative rather than filesystem

v3.12.1

• Bug fix: Multiome path uppercased

v3.12.0

• Jpuerto/outdir fix
• Adding back codex parameters with new data model
• String parsing for PosixPath of ATAC-seq metadata files for data model

v3.11.1

• Bug fix: removing output dir globally defined
• Resync IVT v0.0.31

v3.11.0

• Bump IVT v0.0.31

v3.10.9

• Bug fix: Wrong task_id name on workflow call