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iqbal-lab-org

Iqbal Lab at EMBL-EBI

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  1. pandora pandora Public

    Pan-genome inference and genotyping with long noisy or short accurate reads

    C++ 110 14

  2. gramtools gramtools Public

    Genome inference from a population reference graph

    C++ 94 15

  3. clockwork clockwork Public

    CRyPTIC data processing pipelines

    HTML 31 22

  4. pling pling Public

    Plasmid analysis using rearrangement distances

    JavaScript 31 1

  5. make_prg make_prg Public

    Code to create a PRG from a Multiple Sequence Alignment file

    Python 22 7

  6. minos minos Public

    Variant call adjudication

    Python 16 5

Repositories

Showing 10 of 47 repositories
  • cobs Public Forked from bingmann/cobs

    COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)

    iqbal-lab-org/cobs’s past year of commit activity
    C++ 16 MIT 15 4 1 Updated Nov 24, 2024
  • pling Public

    Plasmid analysis using rearrangement distances

    iqbal-lab-org/pling’s past year of commit activity
    JavaScript 31 MIT 1 4 0 Updated Nov 13, 2024
  • viridian Public
    iqbal-lab-org/viridian’s past year of commit activity
    Python 16 MIT 5 25 0 Updated Nov 4, 2024
  • clockwork Public

    CRyPTIC data processing pipelines

    iqbal-lab-org/clockwork’s past year of commit activity
    HTML 31 MIT 22 20 5 Updated Jul 18, 2024
  • ivcfmerge Public

    A utility to merge a large number of VCF files incrementally

    iqbal-lab-org/ivcfmerge’s past year of commit activity
    Python 3 0 1 1 Updated Jul 9, 2024
  • minos Public

    Variant call adjudication

    iqbal-lab-org/minos’s past year of commit activity
    Python 16 MIT 5 6 0 Updated Jun 13, 2024
  • sprog Public

    Species Probes Generator

    iqbal-lab-org/sprog’s past year of commit activity
    Python 8 MIT 2 0 0 Updated Jun 11, 2024
  • cylon Public

    Virus assembler from amplicon sequencing reads

    iqbal-lab-org/cylon’s past year of commit activity
    Python 5 MIT 1 1 0 Updated Apr 26, 2024
  • make_prg Public

    Code to create a PRG from a Multiple Sequence Alignment file

    iqbal-lab-org/make_prg’s past year of commit activity
    Python 22 7 10 2 Updated Apr 3, 2024
  • paper_pfalciparum_DBs Public
    iqbal-lab-org/paper_pfalciparum_DBs’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Mar 8, 2024
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