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@jbloomlab

jbloomlab

Jesse Bloom's lab GitHub account

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  1. phydms phydms Public

    phylogenetic analyses informed by deep mutational scanning data

    HTML 14 5

  2. dms_tools2 dms_tools2 Public

    software for the analysis and visualization of deep mutational scanning data

    Python 34 20

  3. dmslogo dmslogo Public

    draw sequence logos tailored to deep mutational scanning (DMS) data

    Jupyter Notebook 12 1

  4. neutcurve neutcurve Public

    Fit and plot neutralization curves

    Jupyter Notebook 9 3

Repositories

Showing 10 of 139 repositories
  • polyclonal Public

    Model mutational escape from polyclonal antibodies.

    jbloomlab/polyclonal’s past year of commit activity
    Jupyter Notebook 3 0 3 0 Updated Apr 6, 2025
  • binarymap Public

    Binary representations of protein/nucleotide sequences.

    jbloomlab/binarymap’s past year of commit activity
    Python 0 1 0 0 Updated Apr 6, 2025
  • alignparse Public

    Align sequences and then parse features.

    jbloomlab/alignparse’s past year of commit activity
    Jupyter Notebook 17 9 1 0 Updated Apr 5, 2025
  • jbloomlab.github.io Public

    A website for the Bloom lab

    jbloomlab/jbloomlab.github.io’s past year of commit activity
    Vue 0 0 0 0 Updated Mar 25, 2025
  • flu_seqneut_H3N2_2023-2024 Public

    sequencing-based neutralization assay on H3N2 HA variants from 2023-2024

    jbloomlab/flu_seqneut_H3N2_2023-2024’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Mar 13, 2025
  • flu_H3_2023_seqneut_vs_growth Public

    Growth rates of influenza viruses with HAs in H3 2023-2024 sequencing-based neutralization libraries

    jbloomlab/flu_H3_2023_seqneut_vs_growth’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Mar 12, 2025
  • RSV-evolution-neut Public
    jbloomlab/RSV-evolution-neut’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 12, 2025
  • cov-229E-spike-phylo Public
    jbloomlab/cov-229E-spike-phylo’s past year of commit activity
    Python 0 0 0 0 Updated Mar 6, 2025
  • Ab-CGGnaive_DMS Public

    deep mutational scanning of the CGGnaive antibody

    jbloomlab/Ab-CGGnaive_DMS’s past year of commit activity
    Jupyter Notebook 1 0 2 1 Updated Feb 3, 2025
  • ZIKV_DMS_NS3_EvansLab Public

    Deep mutational scanning of Zika virus strain MR766 nonstructural protein 3 (NS3) with Matt Evans lab

    jbloomlab/ZIKV_DMS_NS3_EvansLab’s past year of commit activity
    Jupyter Notebook 2 0 0 1 Updated Jan 8, 2025
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