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Fixes for BEAST loggers and STEMMA state encodings
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@jjmccollum jjmccollum released this 24 Oct 23:34
· 21 commits to main since this release
v0.1.12
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This minor release adds some missing attributes to state/ancestral logger elements in BEAST outputs to ensure that root frequencies (corresponding to intrinsic probability judgments) are incorporated into probability calculations for state sampling. It also fixes a previous bug in mapping variant reading indices to state codes in STEMMA outputs, so that reading indices (up to a maximum of 24 per variation unit) are now mapped to single-character state codes.

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