dev

after/queries/python/injections.scm

@@ -0,0 +1,25 @@
+; extends
+((call
+  function: (identifier) @function_name (#eq? @function_name "Style")
+  arguments: (argument_list
+    (string
+      (string_content) @injection.content)))
+
+  (#set! injection.language "css"))
+
+((call
+  function: (identifier) @function_name (#eq? @function_name "Script")
+  arguments: (argument_list
+    (string
+      (string_content) @injection.content)))
+
+  (#set! injection.language "javascript"))
+
+((call
+  function: (identifier) @function_name (#eq? @function_name "On")
+  arguments: (argument_list
+
+    (string
+      (string_content) @injection.content))
+
+  (#set! injection.language "javascript")))

ftplugin/python.lua

@@ -1 +1,3 @@
 vim.b.slime_cell_delimiter = '#\\s\\=%%'
+
+require("otter").activate()

init.lua

@@ -14,3 +14,8 @@ require 'config.global'
 require 'config.lazy'
 require 'config.autocommands'
 require 'config.redir'
+
+
+vim.treesitter.language.add('pandoc_markdown', { path = "/usr/local/lib/libtree-sitter-pandoc-markdown.so" })
+vim.treesitter.language.add('pandoc_markdown_inline', { path = "/usr/local/lib/libtree-sitter-pandoc-markdown-inline.so" })
+vim.treesitter.language.register('pandoc_markdown', { 'quarto', 'rmarkdown' })

lua/config/keymap.lua

@@ -58,11 +58,13 @@ nmap('Q', '<Nop>')
 --- TODO: figure out bracketed paste for reticulate python repl.
 local function send_cell()
   local has_molten, molten_status = pcall(require, 'molten.status')
+  local molten_works = false
   local molten_active = ""
   if has_molten then
-    molten_active = molten_status.kernels()
+    molten_works, molten_active = pcall(molten_status.kernels)
   end
-  if molten_active ~= vim.NIL and molten_active ~= "" then
+  if molten_works and molten_active ~= vim.NIL and molten_active ~= "" then
+    print('using quarto send')
     vim.cmd.QuartoSend()
     return
   end

lua/plugins/completion.lua

@@ -123,11 +123,11 @@ return {
           { name = 'path' },
           { name = 'nvim_lsp_signature_help' },
           { name = 'nvim_lsp' },
-          { name = 'luasnip', keyword_length = 3, max_item_count = 3 },
+          { name = 'luasnip',                keyword_length = 3, max_item_count = 3 },
           { name = 'pandoc_references' },
-          { name = 'buffer', keyword_length = 5, max_item_count = 3 },
+          { name = 'buffer',                 keyword_length = 5, max_item_count = 3 },
           { name = 'spell' },
-          { name = 'treesitter', keyword_length = 5, max_item_count = 3 },
+          { name = 'treesitter',             keyword_length = 5, max_item_count = 3 },
           { name = 'calc' },
           { name = 'latex_symbols' },
           { name = 'emoji' },
@@ -174,4 +174,44 @@ return {
       }
     end,
   },
+
+  { -- LLMs
+    "olimorris/codecompanion.nvim",
+    dependencies = {
+      "nvim-lua/plenary.nvim",
+      "nvim-treesitter/nvim-treesitter",
+      "nvim-telescope/telescope.nvim",
+      {
+        "stevearc/dressing.nvim", -- Optional: Improves the default Neovim UI
+        opts = {},
+      },
+    },
+    keys = {
+      { '<leader>ac', ':CodeCompanionChat<cr>', desc = '[a]i chat' },
+    },
+    config = function()
+      require("codecompanion").setup({
+        strategies = {
+          chat = {
+            adapter = "anthropic",
+          },
+          inline = {
+            adapter = "anthropic",
+          },
+          agent = {
+            adapter = "anthropic",
+          },
+        },
+        adapters = {
+          anthropic = function()
+            return require("codecompanion.adapters").extend("anthropic", {
+              env = {
+                api_key = os.getenv("ANTHROPIC_API_KEY")
+              },
+            })
+          end,
+        },
+      })
+    end
+  }
 }

lua/plugins/lsp.lua

@@ -5,7 +5,7 @@ return {
 
     -- for lsp features in code cells / embedded code
     'jmbuhr/otter.nvim',
-    dev = true,
+    dev = false,
     dependencies = {
       {
         'neovim/nvim-lspconfig',
@@ -100,8 +100,8 @@ return {
           map('gh', vim.lsp.buf.signature_help, '[g]o to signature [h]elp')
           map('gI', vim.lsp.buf.implementation, '[g]o to [I]mplementation')
           map('gr', vim.lsp.buf.references, '[g]o to [r]eferences')
-          map('[d', function () vim.diagnostic.jump({count = 1}) end,'previous [d]iagnostic ')
-          map(']d', function () vim.diagnostic.jump({count = -1}) end, 'next [d]iagnostic ')
+          map(']d', function () vim.diagnostic.jump({count = 1}) end,'previous [d]iagnostic ')
+          map('[d', function () vim.diagnostic.jump({count = -1}) end, 'next [d]iagnostic ')
           map('<leader>ll', vim.lsp.codelens.run, '[l]ens run')
           map('<leader>lR', vim.lsp.buf.rename, '[l]sp [R]ename')
           map('<leader>lf', vim.lsp.buf.format, '[l]sp [f]ormat')
@@ -182,7 +182,7 @@ return {
         flags = lsp_flags,
       }
 
-      lspconfig.tsserver.setup {
+      lspconfig.ts_ls.setup {
         capabilities = capabilities,
         flags = lsp_flags,
         filetypes = { 'js', 'javascript', 'typescript', 'ojs' },

lua/plugins/notes.lua

@@ -21,7 +21,7 @@ return {
 
   {
     'epwalsh/obsidian.nvim',
-    enabled = false,
+    enabled = true,
     ft = 'markdown',
     event = {
       -- If you want to use the home shortcut '~' here you need to call 'vim.fn.expand'.

lua/plugins/quarto.lua

@@ -127,12 +127,13 @@ return {
 
   {
     'benlubas/molten-nvim',
+    dev = true,
     enabled = true,
     build = ':UpdateRemotePlugins',
     init = function()
       vim.g.molten_image_provider = 'image.nvim'
       vim.g.molten_output_win_max_height = 20
-      vim.g.molten_auto_open_output = false
+      vim.g.molten_auto_open_output = true
     end,
     keys = {
       { '<leader>mi', ':MoltenInit<cr>', desc = '[m]olten [i]nit' },