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Add a link to SamJavascript
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karel-brinda committed Sep 1, 2017
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Expand Up @@ -130,6 +130,7 @@ Similar programs
* `samtools view <http://www.htslib.org/doc/samtools.html>`_ can filter alignments based on FLAGS, read group tags, and CIGAR strings.
* `sambamba view <http://lomereiter.github.io/sambamba/docs/sambamba-view.html>`_ supports, in addition to SAMtools, filtration using `simple perl expression <https://github.com/lomereiter/sambamba/wiki/%5Bsambamba-view%5D-Filter-expression-syntax>`_. However, it's not possible to compare different tags.
* `bamPals <https://github.com/zeeev/bamPals>`_ adds tags XB, XE, XP and XL.
* `SamJavascript <http://lindenb.github.io/jvarkit/SamJavascript.html>`_ can filter alignments using JavaScript expressions.


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