Phenopackets-based metadata service for the Bento platform. Docs: https://metadata-service.readthedocs.io

Ansible for DevOps examples.

👩‍🏫🐍 Starter repo for building interactive Python courses

A simple CLI tool to lint to Jupyter notebooks

Cell-by-cell testing for production Jupyter notebooks in JupyterLab

Clone student repositories in bulk

A system for assigning and grading notebooks

The repository used to manage "awesome course 101"

The repository used to manage "awesome course 101"

A python package for checking and testing matplotlib plots. We use this for autograding student assignments but there are many other potential use cases including package testing (for packages with…

Infrastructure and operations for the Earth Lab JupyterHub

Taxonomic Names and Concepts Interest Group

DINA Taxonomy module

Open First Whitepaper - Livre blanc Ouvert en premier

Human assisted entity-name matching interface

The Taxonomic Name Resolution Service is a free utility for correcting and standardizing plant names.

Instructor Training

This is my no-good-very-bad template for Jekyll (modified from jekyll-new and Alex King's Favepersonal).

C++14 lib for parsing of trees from newick, nexson, and taxonomy.tsv formats; tree calculations and manipulations

make-based supertree pipeline - will be abandoned or moved to the Open Tree of Life repo soon

Minimalist alternatives to "best practices" paper

An Ansible role for managing a PostgreSQL server

implementation of phylesystem-api built on pyramid

An example of how to make a fancy scientific talk in HTML

GWT phylogenetic tree viewer

The HTML Presentation Framework