added debug_mode to example_config.toml

Author: fhamood

example_config.toml

@@ -4,6 +4,7 @@
 output = "<Path to output>"
 threads = "<Number of threads>"
 tmt_ms_level = "<ms2/ms3>"
+debug_mode = false
 
 [inputs]
 maxquant_results = "<Path to MaxQuant combined/txt/>"

prosimsit/main.py

@@ -10,19 +10,23 @@
 from prosimsit.oktoberfest_functions import prepare_second_oktoberfest_run, preprocess_spectra_files, annotate_library, \
     generate_pred_files, calculate_featuers, generate_oktoberfest_config
 from prosimsit.picked_fdr_functions import run_picked_protein_group_fdr
+from prosimsit.raw import convert_and_get_path
 from . import __version__, __copyright__
 from .utils import *
 from .command_line_interface import read_config
 from .simsi_functions import prepare_simsi_files, build_evidence
 from .io import read_msms_singlecol
 
-#logging.basicConfig(level=logging.DEBUG)
+
 logger = logging.getLogger(__name__)
 
 def main(argv):
     config = read_config(argv)
     print(config)
 
+    if config['general']['debug_mode']:
+        logging.basicConfig(level=logging.DEBUG)
+
     output_dir = Path(config['general']['output'])
     threads = config['general']['threads']