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Multiqc tweaking #76

Merged
merged 7 commits into from
Dec 21, 2017
Merged

Multiqc tweaking #76

merged 7 commits into from
Dec 21, 2017

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daler
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@daler daler commented Dec 21, 2017

This PR overhauls the MultiQC config for both RNA-seq and ChIP-seq:

  • general stats table is now much less confusing, as rows for different stages (raw, cutadapt, bam) are effectively merged into columns
  • running fastqc module separate times (raw, trimmed, aligned) gives different sections and also gives the corresponding columns in the general stats table
  • ordering of modules reflects the workflow
  • general stats columns are organized so that the different stages of fastqc can be directly compared to each other
  • better column names and better ordering for the libsizes table
  • plotFingergprint logs will now make it into the multiqc report

@daler daler merged commit 43f6e7f into master Dec 21, 2017
@daler daler deleted the multiqc-tweaking branch December 21, 2017 18:49
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