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  1. minimap2 minimap2 Public

    A versatile pairwise aligner for genomic and spliced nucleotide sequences

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  2. bwa bwa Public

    Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

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  3. minigraph minigraph Public

    Sequence-to-graph mapper and graph generator

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  4. miniprot miniprot Public

    Align proteins to genomes with splicing and frameshift

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  5. pangene pangene Public

    Constructing a pangenome gene graph

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  6. ropebwt3 ropebwt3 Public

    BWT construction and search

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