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fixing tiny capitalization
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AndreaSanchezTapia committed Apr 3, 2021
1 parent aa9d069 commit ef3d7af
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2 changes: 1 addition & 1 deletion vignettes/articles/check_taxa.Rmd
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Expand Up @@ -107,7 +107,7 @@ list_taxa <- lapply(search_taxa, check_flora)

### Output

Still deciding the output. The columns `synonym` and `scientificName_search` were additioned by hand inside function, other columns are exactly the same as in the API of Brazilian Flora 2020.
Still deciding the output. The columns `synonym` and `scientificName_search` were added by hand inside function, other columns are exactly the same as in the API of Brazilian Flora 2020.

#### *Lindsaea lancea*

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2 changes: 1 addition & 1 deletion vignettes/articles/searching_flora.Rmd
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Expand Up @@ -38,7 +38,7 @@ Function `search_flora()` returns lists of scientific names (in full format) for
- endemics or not from Brazil

```{r library, eval = F}
library(rocc)
library(Rocc)
```

```{r load, echo = FALSE, warning=FALSE}
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4 changes: 2 additions & 2 deletions vignettes/articles/using_rgbif2.Rmd
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Expand Up @@ -15,12 +15,12 @@ knitr::opts_chunk$set(collapse = TRUE,

Installing and loading the package:

`devtools::install_github("saramortara/rocc")`
`devtools::install_github("liibre/Rocc")`

This package also downloads records from from [GBIF](https://www.gbif.org/) and [jabot](http://jabot.jbrj.gov.br/v3/consulta.php) collections. The function `rgbif2()` encapulates funtions from **rgbif** package to receive a species scientific name and return the output as a .csv file written on disk.

```{r setup, echo = FALSE, message = FALSE}
#library(rocc)
#library(Rocc)
devtools::load_all() # for development
```

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4 changes: 2 additions & 2 deletions vignettes/articles/using_rspeciesLink.Rmd
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Expand Up @@ -16,10 +16,10 @@ devtools::load_all()

Installing and loading the package:

`devtools::install_github("saramortara/rocc")`
`devtools::install_github("liibre/Rocc")`

```{r setup, eval = FALSE}
library(rocc)
library(Rocc)
```

This package downloads information from the [speciesLink API](http://api.splink.org.br/). It generates the desired url and uses functions from `jsonlite` package to GET the url and save the output as a csv file. The speciesLink API is a courtesy of Sidnei de Souza from [CRIA](http://www.cria.org.br/) (Centro de Referência em Informação Ambiental) :)
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4 changes: 2 additions & 2 deletions vignettes/basic_workflow.Rmd
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Expand Up @@ -18,7 +18,7 @@ library(dplyr)
## 0. Installing and loading package

```{r install, eval = FALSE}
remotes::install_github("liibre/rocc")
remotes::install_github("liibre/Rocc")
library(dplyr)
library(Rocc)
```
Expand Down Expand Up @@ -92,7 +92,7 @@ df_ok <- df[df$scientificName %in% verbatimSpecies_ok, ]
```

In this cleaning we went from a total of `r nrow(df)` occurrences to `r 1505` occurrences.
In this cleaning we went from a total of `r nrow(df)` occurrences to `r nrow(df_ok)` occurrences.

Finally, we can write the resultant occurrence data on disk.

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