Add gene annotation data

.gitignore

@@ -131,5 +131,3 @@ dmypy.json
 # IDEs
 .idea/
 .vscode/
-
-**/*.metta

bio-docker-up

@@ -0,0 +1,17 @@
+unset DAS_MONGODB_HOSTNAME
+unset DAS_COUCHBASE_HOSTNAME
+cp bio-index.txt /tmp
+docker stop `docker ps | grep 'das_app\|das_couchbase\|das_mongo' | cut -d' ' -f1` >& /dev/null
+docker rm `docker ps -a | grep 'das_app\|das_couchbase\|das_mongo' | cut -d' ' -f1` >& /dev/null
+docker volume rm das_couchbasedata >& /dev/null
+docker volume rm das_mongodbdata >& /dev/null
+docker-compose up -d
+sleep 10
+./scripts/couchbase_setup.sh
+./bio-mongo-load
+sleep 60
+docker-compose exec app python das/das_generate_file.py -d BIO --file-path /tmp/bio_all_pairs.txt --index-config /tmp/bio-index.txt
+sleep 10
+docker-compose exec app python das/das_upload_to_couch_from_file.py --file-path /tmp/bio_all_pairs.txt
+sleep 10
+docker-compose exec couchbase cbq --user dbadmin --password dassecret --script "CREATE PRIMARY INDEX ON default:das._default.Names" http://localhost:8091

bio-index.txt

@@ -0,0 +1,5 @@
+Context 3 1 2 3
+Member 3 1 2 3
+Evaluation 3 1 2 3
+Inheritance 3 1 2 3
+List 3 1 2 3