Add line to overwrite get_metadata()

maehrlab · Feb 28, 2019 · 600dd5e · 600dd5e
1 parent f56e1ee
commit 600dd5e
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Showing 4 changed files with 4 additions and 5 deletions.
diff --git a/.gitignore b/.gitignore
@@ -10,3 +10,4 @@
 *.svg
 *.dge
 *.data
+*.gz
diff --git a/.gitignore~ b/.gitignore~
diff --git a/results/.inventory.txt b/results/.inventory.txt
@@ -1,2 +1,2 @@
 tag	parent_tag	date_modified	filename	extra
-overview_old_labels		2019_Feb_25|08_15_55	/Users/erickernfeld/Dropbox/atlas_paper_2017/immunity_paper_release/tables/fig1_label_conversions.txt	
+overview_old_labels		2019_Feb_28|13_33_07	/Users/erickernfeld/Dropbox/atlas_paper_2017/immunity_paper_release/tables/fig1_label_conversions.txt	
diff --git a/scripts/main.Rmd b/scripts/main.Rmd
@@ -12,6 +12,8 @@ output: html_document
 # You may need to run setwd(proj_dir) in the console due to knitr's well-documented working directory insanity.
 proj_dir = "~/Dropbox/atlas_paper_2017/immunity_paper_release"
 get_metadata_path = function() file.path( proj_dir, "data", "metadata.csv")
+get_metadata = function() read.csv(file.path(get_metadata_path()), stringsAsFactors = F)
+
 setwd(file.path(proj_dir, "scripts"))
 PATH_TO_SEURAT_1 = "~/Library/R/3.3/library/Seurat_1"
 # withr::with_libpaths( PATH_TO_SEURAT_1, devtools::install_github( "maehrlab/thymus_atlas_tools" ) )
-Original file line number
+Diff line change
@@ Expand Up / @@ -10,3 +10,4 @@ @@
     *.svg
     *.dge
     *.data
+    *.gz